Factsheet for GSMUA_Achr10P14600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P14220_001	Banana	cytosol	94.81	87.38
VIT_00s2262g00010.t01	Wine grape	cytosol	35.48	70.08
EER95473	Sorghum	cytosol	70.95	68.54
Zm00001d027728_P001	Maize	extracellular, plasma membrane	70.54	67.46
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	70.75	67.39
TraesCS4B01G274200.1	Wheat	cytosol	70.54	67.19
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	69.92	66.73
TraesCS4A01G031800.1	Wheat	cytosol	70.33	66.73
TraesCS5B01G534600.1	Wheat	cytosol	66.39	66.39
TraesCS5D01G532700.1	Wheat	cytosol	65.56	66.25
TraesCS4D01G272900.1	Wheat	cytosol	69.71	66.14
TraesCS4A01G340500.1	Wheat	cytosol	65.35	65.9
TraesCSU01G076700.1	Wheat	cytosol	65.15	65.83
Solyc04g082790.2.1	Tomato	plastid	66.81	64.53
Solyc10g085790.1.1	Tomato	nucleus	67.01	63.58
PGSC0003DMT400022137	Potato	nucleus	67.22	63.03
KRG99590	Soybean	endoplasmic reticulum, nucleus	62.24	61.48
CDX67556	Canola	cytosol	59.13	60.38
VIT_08s0007g04400.t01	Wine grape	cytosol	64.11	60.23
CDY13319	Canola	cytosol	61.2	60.2
KRG93607	Soybean	nucleus	61.62	60.0
Bra028547.1-P	Field mustard	cytosol	60.58	59.47
CDX95397	Canola	cytosol	60.79	59.31
Bra040687.1-P	Field mustard	cytosol	60.79	59.07
CDX76225	Canola	cytosol	60.58	58.87
AT3G53110.1	Thale cress	cytosol	59.75	58.06
VIT_08s0007g04430.t01	Wine grape	cytosol	35.48	54.98
GSMUA_Achr9P23810_001	Banana	cytosol	28.22	35.05
GSMUA_Achr2P19480_001	Banana	cytosol	26.76	34.86
GSMUA_Achr7P19690_001	Banana	cytosol	25.52	34.84
GSMUA_AchrUn_...	Banana	cytosol	26.56	34.59
GSMUA_Achr8P24670_001	Banana	cytosol	26.97	34.57
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	29.46	34.38
GSMUA_Achr10P...	Banana	cytosol	26.97	33.94
GSMUA_Achr3P27120_001	Banana	cytosol	22.82	33.03
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	26.97	29.75
GSMUA_Achr8P05380_001	Banana	cytosol	27.59	28.73
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	28.63	28.05
GSMUA_Achr5P12220_001	Banana	cytosol	28.42	27.85
GSMUA_Achr2P10560_001	Banana	cytosol	27.59	27.37
GSMUA_Achr5P22650_001	Banana	cytosol, plastid	12.45	26.2
GSMUA_Achr9P13950_001	Banana	mitochondrion	16.39	25.73
GSMUA_Achr3P26010_001	Banana	endoplasmic reticulum	25.52	24.7
GSMUA_Achr11P...	Banana	cytosol	28.63	24.42
GSMUA_Achr1P01890_001	Banana	plastid	20.95	19.09
GSMUA_Achr6P27990_001	Banana	plastid	19.09	18.97

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr10G14600_001	EnsemblPlants:GSMUA_Achr10P14600_001	EnsemblPlants:GSMUA_Achr10T14600_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0RI86	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002950FDA
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 38 [Source:GMGC_GENE;Acc:GSMUA_Achr10G14600_001]

Coordinates

chr10:+:22809234..22815174

Molecular Weight (calculated)

54019.4 Da

IEP (calculated)

5.241

GRAVY (calculated)

-0.489

Length

482 amino acids

Sequence
(BLAST)

001: MAENAAPPAK TEEKRSWADE ESDEEKEAAA PPSQAADEAQ PSELKKIESL SISDGKDSGE RLLDDPDDSE IKAVTSGDTV YTSAVTFEDL KLSDELIKGL
101: YVEMGFSKPS KIQAITLPMI LTPPYKDLVA QAHNGSGKTT CFVLGMLSRV DPKRKIPQAI CICPTRELAQ QMGKYTGITS MCAIPSDSAN YIPINKRPPV
201: TEQVVIGTPG TIKKWTSAKK LSTRDMKILV FDEADHMLAE DGFRDDSERI MKEIQRSSGG CQVLLFSATF NEAVKAFVSR VIKDGNQIFV KKEELTLEKV
301: KQYKVQCPDE LSKVEVIKDK IFEFGQKVGQ TIIFVRTRNS ARMLHQSLTE EGYECTSVQG ALKQEDRDQI IKEFKDGLTK VLITTDLLAR GFDQRQVNLV
401: INYDLPIKHD NPSEPDCELY LHRVGRTGRF GSKGAVFNFL CTDRDRSVME KIERHFQHHI PEIPNWRSEE DFESALKDAG LL

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.