Factsheet for TraesCSU01G076700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G532700.1	Wheat	cytosol	98.74	98.74
TraesCS4A01G340500.1	Wheat	cytosol	97.69	97.49
TraesCS5B01G534600.1	Wheat	cytosol	95.81	94.81
EER95473	Sorghum	cytosol	81.97	78.36
Zm00001d027728_P001	Maize	extracellular, plasma membrane	81.97	77.58
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	80.08	75.64
GSMUA_Achr10P...	Banana	nucleus	65.83	65.15
VIT_00s2262g00010.t01	Wine grape	cytosol	32.08	62.7
GSMUA_Achr6P14220_001	Banana	cytosol	65.62	59.85
KRG99590	Soybean	endoplasmic reticulum, nucleus	58.91	57.58
Solyc04g082790.2.1	Tomato	plastid	59.75	57.11
Solyc10g085790.1.1	Tomato	nucleus	59.75	56.1
KRG93607	Soybean	nucleus	57.86	55.76
PGSC0003DMT400022137	Potato	nucleus	59.96	55.64
CDX67556	Canola	cytosol	54.3	54.87
CDX95397	Canola	cytosol	56.18	54.25
CDX76225	Canola	cytosol	56.39	54.23
Bra040687.1-P	Field mustard	cytosol	56.39	54.23
CDY13319	Canola	cytosol	55.56	54.08
Bra028547.1-P	Field mustard	cytosol	55.56	53.97
VIT_08s0007g04400.t01	Wine grape	cytosol	57.44	53.41
AT3G53110.1	Thale cress	cytosol	55.14	53.02
VIT_08s0007g04430.t01	Wine grape	cytosol	32.7	50.16

Protein Annotations

MapMan:16.11.3.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008186	GO:GO:0009408	GO:GO:0009409	GO:GO:0009628
GO:GO:0009719	GO:GO:0009737	GO:GO:0016020	GO:GO:0016787	GO:GO:0016973	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF331
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCSU01G076700	EnsemblPlants:TraesCSU01G076700.1
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:68495179..68509240

Molecular Weight (calculated)

53381.2 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.304

Length

477 amino acids

Sequence
(BLAST)

001: MAELEKKSPA DVDDPKAIET AVDENQKKME ALSLLAPEDG GGGDGPPLLD DYDDDSQIQA VASGGTVYES ATTFEDLKLT PELLKGLHDE MGFSRPSKIQ
101: AVTLPMILTP PYKNLVAQAH NGSGKTTCFV LGMLNRVDPS RRIPQAICIC PTRELAQQNK SVLMRMSKFT GITCASAISP ALKDYMPISK MAPVTDQVVI
201: GTSGTLIKWI TNKKLATRDI KILVFDEADH MLAEENFMSD SKRIMRDIQS SAGDCQLLLF SATFNEKVKD FITKVIKEGN QIFVKKEDLT LDKVKQYKVR
301: VPDEIAKIEV IRDKIFEFGQ KVGQVIIFVR TKISTKNLHN ALTKEDYVCS SIQGSLDHAE REKVLQEFKD GYTKVLISTD LLARGFDQSQ VNLVINYDMP
401: IKYNSRDEPD YEVYLHIIGR AGRFGRKGAV FNLLCGETDD ILMTKIENYF QHKVQEVPSW ESEENFETVL KDAGLLE

Best Arabidopsis Sequence Match ( AT1G72730.1 )
(BLAST)

001: MAGMASDGTQ YDPRQFDTKM NAILGEEGEE TFYTNYDEVC DSFDAMELQP DLLRGIYAYG FEKPSAIQQR GIIPFCKGLD VIQQAQSGTG KTATFCSGVL
101: QQLDISLVQC QALVLAPTRE LAQQIEKVMR ALGDYLGVKA QACVGGTSVR EDQRVLQSGV HVVVGTPGRV FDLLRRQSLR ADAIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPSKVQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VDKEEWKLET LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RSRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINFDLPTQ PENYLHRIGR SGRFGRKGVA INFMTSEDER MMADIQRFYN
401: VVVEELPSNV ADLL

Arabidopsis Description

TIF4A-3Eukaryotic initiation factor 4A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.