CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99590	Soybean	endoplasmic reticulum, nucleus	90.3	91.6
VIT_00s2262g00010.t01	Wine grape	cytosol	33.54	68.03
CDX67556	Canola	cytosol	61.62	64.62
Bra028547.1-P	Field mustard	cytosol	63.43	63.95
CDY13319	Canola	cytosol	63.23	63.88
Bra040687.1-P	Field mustard	cytosol	63.64	63.51
CDX76225	Canola	cytosol	63.64	63.51
CDX95397	Canola	cytosol	63.23	63.36
Solyc04g082790.2.1	Tomato	plastid	63.23	62.73
AT3G53110.1	Thale cress	cytosol	62.02	61.9
GSMUA_Achr10P...	Banana	nucleus	60.0	61.62
Solyc10g085790.1.1	Tomato	nucleus	63.03	61.42
PGSC0003DMT400022137	Potato	nucleus	63.43	61.09
VIT_08s0007g04400.t01	Wine grape	cytosol	62.63	60.43
TraesCS4A01G340500.1	Wheat	cytosol	56.16	58.16
TraesCSU01G076700.1	Wheat	cytosol	55.76	57.86
TraesCS5D01G532700.1	Wheat	cytosol	55.76	57.86
TraesCS5B01G534600.1	Wheat	cytosol	55.96	57.47
EER95473	Sorghum	cytosol	57.58	57.11
HORVU4Hr1G072920.1	Barley	cytosol, plasma membrane	58.18	56.92
TraesCS4A01G031800.1	Wheat	cytosol	58.38	56.89
TraesCS4B01G274200.1	Wheat	cytosol	57.98	56.72
TraesCS4D01G272900.1	Wheat	cytosol	57.98	56.5
Zm00001d027728_P001	Maize	extracellular, plasma membrane	57.37	56.35
GSMUA_Achr6P14220_001	Banana	cytosol	59.19	56.02
Os03t0158200-01	Rice	cytosol, plasma membrane, plastid	56.77	55.64
VIT_08s0007g04430.t01	Wine grape	cytosol	34.55	54.98
KRH12197	Soybean	nucleus	28.08	34.24
KRH37217	Soybean	endoplasmic reticulum	28.08	34.15
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	28.08	33.66
KRH12430	Soybean	cytosol	28.08	33.66
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	28.08	33.66
KRH37426	Soybean	cytosol, endoplasmic reticulum	28.08	33.66
KRH47074	Soybean	nucleus	27.88	33.41
KRH10048	Soybean	cytosol, endoplasmic reticulum	27.68	33.17
KRH23270	Soybean	cytosol	27.68	33.17
KRH52210	Soybean	cytosol, endoplasmic reticulum	27.47	32.93
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	27.47	32.93
KRH44102	Soybean	nucleus	27.88	32.78
KRH47464	Soybean	nucleus	26.06	30.28
KRH44441	Soybean	cytosol, nucleus	26.06	30.28
KRH61783	Soybean	cytosol	25.66	29.74
KRH52452	Soybean	nucleus	25.66	29.74
KRH04755	Soybean	cytosol	15.35	28.68
KRH48173	Soybean	mitochondrion	27.07	26.8
KRH65096	Soybean	nucleus	26.87	26.65
KRH48170	Soybean	endoplasmic reticulum	27.07	26.64
KRH65098	Soybean	endoplasmic reticulum, nucleus	26.87	26.49
KRH40488	Soybean	cytosol	26.87	24.68
KRH43643	Soybean	nucleus	24.24	21.35
KRH13813	Soybean	nucleus	23.84	21.0
KRH51049	Soybean	plastid	16.57	17.37
KRH02098	Soybean	cytosol	7.88	16.96

Protein Annotations

EntrezGene:100784739	MapMan:16.11.3.1	Gene3D:3.40.50.300	EMBL:ACUP02011601	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_19G027600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1N696	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRG93607	ProteinID:KRG93607	ProteinID:KRG93607.1	ProteinID:KRG93608.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF331	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233ED46
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:3454319..3460116

Molecular Weight (calculated)

54944.5 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.314

Length

495 amino acids

Sequence
(BLAST)

001: MAEPSSTAAT AATAATASTA DPPAPVTKSW ADEADEETNN TSTAESESSS INLEALTIDD KENNSSKFLD DPDDSNIQAV TSGDTPYTSA ARFEDLSLSP
101: ELLKGLYVEM KFEKPSKIQA ISLPMILSPP HRDLIAQAHN GSGKTTCFVL GMLSRVDPKV QAPQALCVCP TRELAIQNVE VLRRMGKYTG IASECLVRLD
201: RDAVHVSKRA PIMAQVVIGT PGTIKKFISF KKLGTSRLKI LVFDEADQML AQEGFRDDSL KIMKDIEKDN KKCQVLLFSA TFNDTVKNFI SRTVKMDHNK
301: LFVKKEELSL DAVKQYKVYC PDELAKIDVI KDYIFEIGEN VGQTIIFMAT RDSARLLHQA LVNLGYEVTS IQGSLSNEER DKVVKEFKDG LTQVLISTDI
401: LARGFDQQQV NLVINYNLPN KHSLRDEPDY EVYLHRVGRA GRFGRKGAVF NLICDENDER LMSKIENHFG TCVTEVRAQS VEEYKAALKE AGLLQ

Best Arabidopsis Sequence Match ( AT3G53110.1 )
(BLAST)

001: MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP
101: ELMKGLYVEM KFEKPSKIQA ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME VLQKMGKFTG ITAELAVPDS
201: TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301: LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI
401: ARGFDQQRVN LVVNYNLPTK YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS EEEYKSALKE AGLLDE

Arabidopsis Description

RH38DEAD-box ATP-dependent RNA helicase 38 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.