CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23270	Soybean	cytosol	100.0	100.0
KRH47074	Soybean	nucleus	97.34	97.34
KRH44102	Soybean	nucleus	97.34	95.49
GSMUA_Achr8P24670_001	Banana	cytosol	85.96	94.41
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	94.19	94.19
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	93.95	93.95
VIT_11s0016g01920.t01	Wine grape	cytosol	93.7	93.7
GSMUA_Achr2P19480_001	Banana	cytosol	83.78	93.51
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	93.46	93.46
KRH12430	Soybean	cytosol	93.46	93.46
Zm00001d014673_P001	Maize	plastid	93.46	93.24
Zm00001d036480_P001	Maize	plasma membrane, plastid	93.46	93.24
KRH37426	Soybean	cytosol, endoplasmic reticulum	93.22	93.22
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	93.22	93.22
Zm00001d015251_P001	Maize	extracellular	92.49	93.17
EES04512	Sorghum	cytosol	92.49	93.17
Os02t0146600-01	Rice	plastid	93.22	93.0
GSMUA_AchrUn_...	Banana	cytosol	83.29	92.97
KRH52210	Soybean	cytosol, endoplasmic reticulum	92.74	92.74
PGSC0003DMT400012518	Potato	cytosol	92.74	92.74
TraesCS7D01G412200.1	Wheat	golgi, nucleus	92.74	92.51
TraesCS7A01G419400.1	Wheat	cytosol	92.49	92.27
TraesCS7B01G320000.1	Wheat	cytosol	92.49	92.27
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	92.25	92.25
TraesCS6B01G144100.1	Wheat	cytosol	42.62	92.15
Os06t0701100-02	Rice	extracellular, nucleus, plastid	91.77	91.55
GSMUA_Achr10P...	Banana	cytosol	84.75	91.38
GSMUA_Achr7P19690_001	Banana	cytosol	77.24	90.37
VIT_09s0002g01760.t01	Wine grape	cytosol	93.7	88.76
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	92.74	86.65
TraesCS6A01G116200.1	Wheat	endoplasmic reticulum, vacuole	92.74	86.65
GSMUA_Achr5P06410_001	Banana	cytosol, mitochondrion	84.02	79.41
HORVU6Hr1G020910.1	Barley	cytosol	92.49	75.64
OQU76995	Sorghum	cytosol	93.22	74.47
TraesCS6B01G144000.1	Wheat	golgi	92.74	69.51
KRH12197	Soybean	nucleus	60.53	61.58
KRH37217	Soybean	endoplasmic reticulum	60.29	61.18
KRH04755	Soybean	cytosol	22.52	35.09
KRH47464	Soybean	nucleus	35.84	34.74
KRH44441	Soybean	cytosol, nucleus	35.84	34.74
KRH52452	Soybean	nucleus	35.84	34.66
KRH61783	Soybean	cytosol	35.84	34.66
KRH48173	Soybean	mitochondrion	36.32	30.0
KRH65098	Soybean	endoplasmic reticulum, nucleus	36.32	29.88
KRH65096	Soybean	nucleus	36.08	29.86
KRH48170	Soybean	endoplasmic reticulum	36.32	29.82
KRG99590	Soybean	endoplasmic reticulum, nucleus	33.41	28.28
KRH40488	Soybean	cytosol	36.56	28.01
KRG93607	Soybean	nucleus	33.17	27.68
KRH02098	Soybean	cytosol	12.35	22.17
KRH51049	Soybean	plastid	24.7	21.61
KRH13813	Soybean	nucleus	27.12	19.93
KRH43643	Soybean	nucleus	27.12	19.93

Protein Annotations

EntrezGene:100777628	EntrezGene:100809395	MapMan:17.4.2.1	Gene3D:3.40.50.300	UniProt:A0A0R0FUV4	EMBL:ACUP02008459
EMBL:ACUP02009117	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_15G026100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH10048	ProteinID:KRH10048
ProteinID:KRH10048.1	ProteinID:KRH23270.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001B34290	:

Description

hypothetical protein

Coordinates

chr15:-:2108296..2111835

Molecular Weight (calculated)

46648.0 Da

IEP (calculated)

5.191

GRAVY (calculated)

-0.227

Length

413 amino acids

Sequence
(BLAST)

001: MAGLAPEGSQ FDARQYDSKM NELLSADGQE FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF ERPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGILQ
101: QLDYGLVQCQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILQAGVH TVVGTPGRVF DMLRRQSLRP DHIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PGQIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEDWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: SNDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTLDDARM LSDIQKFYNV
401: TVEELPSNVA DLL

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.