Factsheet for TraesCS7B01G320000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G419400.1	Wheat	cytosol	100.0	100.0
TraesCS7D01G412200.1	Wheat	golgi, nucleus	99.76	99.76
TraesCS6B01G144100.1	Wheat	cytosol	45.41	98.43
Os06t0701100-02	Rice	extracellular, nucleus, plastid	98.31	98.31
VIT_04s0008g01000.t01	Wine grape	cytosol, extracellular	93.96	94.19
GSMUA_Achr8P24670_001	Banana	cytosol	85.51	94.15
VIT_11s0016g01920.t01	Wine grape	cytosol	93.72	93.95
GSMUA_Achr6P01750_001	Banana	cytosol, plasma membrane	93.24	93.46
KRH37426	Soybean	cytosol, endoplasmic reticulum	93.24	93.46
KRH12430	Soybean	cytosol	93.24	93.46
KRH23270	Soybean	cytosol	92.27	92.49
KRH02682	Soybean	cytosol, endoplasmic reticulum, nucleus	92.27	92.49
KRH10048	Soybean	cytosol, endoplasmic reticulum	92.27	92.49
KRH19215	Soybean	cytosol, endoplasmic reticulum, nucleus	92.03	92.25
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	91.79	92.01
KRH47074	Soybean	nucleus	91.55	91.77
PGSC0003DMT400012518	Potato	cytosol	91.3	91.53
GSMUA_Achr10P...	Banana	cytosol	84.3	91.12
GSMUA_Achr7P19690_001	Banana	cytosol	77.29	90.65
KRH44102	Soybean	nucleus	91.79	90.26
VIT_09s0002g01760.t01	Wine grape	cytosol	92.27	87.61
TraesCS6B01G144000.1	Wheat	golgi	98.79	74.23
TraesCS2B01G584200.1	Wheat	mitochondrion	62.32	63.39
TraesCS6B01G472700.1	Wheat	nucleus	61.59	61.89
TraesCS6B01G217800.1	Wheat	cytosol	56.76	55.82
TraesCS3B01G224400.1	Wheat	cytosol	36.23	35.05
TraesCS1B01G477500.1	Wheat	cytosol	36.47	35.03
TraesCS2B01G387200.1	Wheat	cytosol	37.44	31.06
TraesCS6B01G265300.1	Wheat	cytosol	37.2	29.45
TraesCS1B01G189900.1	Wheat	cytosol	35.99	28.38
TraesCS4B01G274200.1	Wheat	cytosol	33.82	27.67
TraesCS5B01G534600.1	Wheat	cytosol	31.16	26.76
TraesCS3B01G592900.1	Wheat	plastid	24.88	22.99
TraesCS6B01G262800.1	Wheat	mitochondrion	26.81	18.47
TraesCS6B01G217700.1	Wheat	cytosol	57.97	17.98

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS7B01G320000	EnsemblPlants:TraesCS7B01G320000.1	TIGR:cd00079
TIGR:cd00268	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:569954805..569956622

Molecular Weight (calculated)

46974.6 Da

IEP (calculated)

5.122

GRAVY (calculated)

-0.257

Length

414 amino acids

Sequence
(BLAST)

001: MAGMAPEGSQ FDAKNYDSKM QELLNQGETE EFFTSYDEVH ESFDDMGLQE NLLRGIYAYG FEKPSAIQQR GIVPFCKGLD VIQQAQSGTG KTATFCSGIL
101: QQLDYGLVEC QALVLAPTRE LAQQIEKVMR ALGDYLGVKV HACVGGTSVR EDQRILASGV HVVVGTPGRV FDMLRRQSLR PDNIKMFVLD EADEMLSRGF
201: KDQIYDIFQL LPGKIQVGVF SATMPPEALE ITRKFMNKPV RILVKRDELT LEGIKQFYVN VEKEEWKLDT LCDLYETLAI TQSVIFVNTR RKVDWLTDKM
301: RGRDHTVSAT HGDMDQNTRD IIMREFRSGS SRVLITTDLL ARGIDVQQVS LVINYDLPTQ PENYLHRIGR SGRFGRKGVA INFVTREDER MLFDIQKFYN
401: VVIEELPANV ADLL

Best Arabidopsis Sequence Match ( AT1G54270.1 )
(BLAST)

001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.