Factsheet for TraesCS6B01G472700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26579155

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G401900.1	Wheat	nucleus	99.51	99.27
TraesCS6A01G416700.1	Wheat	nucleus	99.27	99.03
HORVU6Hr1G094560.1	Barley	cytosol	98.54	98.54
TraesCS2B01G584200.1	Wheat	mitochondrion	93.69	94.84
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	88.35	90.1
Os01t0639100-01	Rice	nucleus	88.35	90.1
Zm00001d051840_P003	Maize	extracellular, mitochondrion	88.83	89.93
EES07819	Sorghum	cytosol	88.59	89.68
GSMUA_Achr9P23810_001	Banana	cytosol	83.5	88.66
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	82.28	86.7
PGSC0003DMT400019783	Potato	cytosol	83.74	84.35
VIT_06s0080g00550.t01	Wine grape	cytosol	84.22	83.61
KRH12197	Soybean	nucleus	82.28	83.5
KRH37217	Soybean	endoplasmic reticulum	82.28	83.29
Zm00001d018542_P006	Maize	cytosol	88.83	82.62
HORVU3Hr1G015500.1	Barley	cytosol	30.58	82.35
HORVU3Hr1G015460.1	Barley	cytosol	30.58	82.35
CDY33416	Canola	cytosol	80.58	81.37
AT3G19760.1	Thale cress	cytosol	80.58	81.37
Bra022449.1-P	Field mustard	cytosol	80.58	81.37
CDY51692	Canola	cytosol	80.34	81.13
CDY42205	Canola	cytosol	80.34	81.13
Bra038231.1-P	Field mustard	cytosol	80.34	81.13
Bra032127.1-P	Field mustard	cytosol	80.34	81.13
CDY24617	Canola	cytosol	80.34	81.13
CDY22956	Canola	cytosol	80.34	81.13
CDX82280	Canola	cytosol	80.1	80.88
HORVU3Hr1G050890.1	Barley	cytosol	30.34	77.16
GSMUA_Achr3P27120_001	Banana	cytosol	62.14	76.88
TraesCS6B01G144100.1	Wheat	cytosol	32.77	70.68
AT1G51380.1	Thale cress	cytosol	65.29	68.62
CDY03623	Canola	cytosol	67.23	68.56
CDY58940	Canola	cytosol	67.23	68.56
Bra014267.1-P	Field mustard	cytosol	67.23	68.56
CDY22577	Canola	cytosol	23.3	64.43
TraesCS7B01G320000.1	Wheat	cytosol	61.89	61.59
TraesCS6B01G144000.1	Wheat	golgi	61.89	46.28
TraesCS6B01G217800.1	Wheat	cytosol	41.5	40.62
TraesCS1B01G477500.1	Wheat	cytosol	32.52	31.09
TraesCS3B01G224400.1	Wheat	cytosol	32.28	31.07
TraesCS2B01G387200.1	Wheat	cytosol	34.71	28.66
TraesCS6B01G265300.1	Wheat	cytosol	34.71	27.34
TraesCS1B01G189900.1	Wheat	cytosol	33.74	26.48
TraesCS4B01G274200.1	Wheat	cytosol	32.28	26.28
TraesCS5B01G534600.1	Wheat	cytosol	30.1	25.73
TraesCS3B01G592900.1	Wheat	plastid	21.36	19.64
TraesCS6B01G262800.1	Wheat	mitochondrion	25.24	17.3
TraesCS6B01G217700.1	Wheat	cytosol	41.5	12.81

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6B01G472700	EnsemblPlants:TraesCS6B01G472700.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:720418530..720423042

Molecular Weight (calculated)

46117.8 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.148

Length

412 amino acids

Sequence
(BLAST)

001: MAAAGGATTS IRRGPGGGGR PMDDENLTFE TSAGVEVVGS FDAMGIREDL LRGIYGYGFE KPSAIQQRAV IPIITGRDVI AQAQSGTGKT SMISLSVCQV
101: IETNVHEVQA LILSPTRELA TQTERVMQAV GNFMSVSVHA CVGGKSIGED IRKLESGVHV VSGTPGRVCD MIKRRTLRTR AIKLLVLDEA DEMLSRGFKD
201: QIYDVYRYLP PELQVVLISA TLPHDILEIT SKFMTDPVRI LVKRDELTLE GIKQFFVAVE KEEWKFDTLC DLYDTLTITQ AVIFCNTKRK VDWLTERMRT
301: NNFTVSAMHG DMPQKERDAI MSEFRGGTTR VLITTDVWAR GLDVQQVSLV INYDLPNNRE LYIHRIGRSG RFGRKGVAIN FVRKDDIRIL RDIEQYYSTQ
401: IDEMPMNVAD LI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.