Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33416 | Canola | cytosol | 96.81 | 96.81 |
| Bra022449.1-P | Field mustard | cytosol | 96.81 | 96.81 |
| CDY42205 | Canola | cytosol | 96.57 | 96.57 |
| CDY24617 | Canola | cytosol | 96.57 | 96.57 |
| Bra038231.1-P | Field mustard | cytosol | 96.57 | 96.57 |
| CDY51692 | Canola | cytosol | 96.57 | 96.57 |
| Bra032127.1-P | Field mustard | cytosol | 96.32 | 96.32 |
| CDY22956 | Canola | cytosol | 96.08 | 96.08 |
| CDX82280 | Canola | cytosol | 96.08 | 96.08 |
| Solyc11g033280.1.1 | Tomato | cytosol, nucleus, plastid | 84.31 | 87.98 |
| GSMUA_Achr9P23810_001 | Banana | cytosol | 82.84 | 87.11 |
| KRH12197 | Soybean | nucleus | 85.78 | 86.21 |
| KRH37217 | Soybean | endoplasmic reticulum | 85.78 | 86.0 |
| VIT_06s0080g00550.t01 | Wine grape | cytosol | 87.01 | 85.54 |
| Os03t0566800-01 | Rice | cytosol, nucleus, plasma membrane | 84.56 | 85.4 |
| Os01t0639100-01 | Rice | nucleus | 84.31 | 85.15 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 76.96 | 85.09 |
| PGSC0003DMT400019783 | Potato | cytosol | 85.05 | 84.84 |
| EES07819 | Sorghum | cytosol | 84.31 | 84.52 |
| Zm00001d051840_P003 | Maize | extracellular, mitochondrion | 83.82 | 84.03 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 78.19 | 82.22 |
| TraesCS2B01G584200.1 | Wheat | mitochondrion | 81.86 | 82.06 |
| HORVU6Hr1G094560.1 | Barley | cytosol | 82.11 | 81.31 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 81.86 | 80.87 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 81.86 | 80.87 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 80.15 | 80.74 |
| TraesCS6B01G472700.1 | Wheat | nucleus | 81.37 | 80.58 |
| GSMUA_Achr3P27120_001 | Banana | cytosol | 64.46 | 78.98 |
| Zm00001d018542_P006 | Maize | cytosol | 83.33 | 76.75 |
| AT1G51380.1 | Thale cress | cytosol | 73.28 | 76.28 |
| HORVU3Hr1G015500.1 | Barley | cytosol | 25.98 | 69.28 |
| HORVU3Hr1G015460.1 | Barley | cytosol | 25.98 | 69.28 |
| HORVU3Hr1G050890.1 | Barley | cytosol | 26.23 | 66.05 |
| AT1G54270.1 | Thale cress | cytosol | 61.03 | 60.44 |
| AT1G72730.1 | Thale cress | cytosol | 60.05 | 59.18 |
| AT3G13920.5 | Thale cress | cytosol | 59.31 | 57.76 |
| AT5G11170.1 | Thale cress | cytosol | 32.84 | 31.38 |
| AT3G61240.1 | Thale cress | cytosol | 35.29 | 28.92 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 35.54 | 28.71 |
| AT5G11200.2 | Thale cress | cytosol | 32.84 | 27.57 |
| AT3G53110.1 | Thale cress | cytosol | 33.09 | 27.22 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 33.82 | 26.14 |
| AT5G19210.2 | Thale cress | plastid | 24.02 | 20.76 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 27.7 | 20.51 |
Protein Annotations
| MapMan:17.3.1.1.1 | Gene3D:3.40.50.300 | EntrezGene:821513 | ProteinID:AEE76283.1 | EMBL:AJ010456 | ArrayExpress:AT3G19760 |
| EnsemblPlantsGene:AT3G19760 | RefSeq:AT3G19760 | TAIR:AT3G19760 | RefSeq:AT3G19760-TAIR-G | EnsemblPlants:AT3G19760.1 | TAIR:AT3G19760.1 |
| EMBL:AY050367 | Unigene:At.22577 | ProteinID:BAB02563.1 | EMBL:BT002207 | InterPro:DEAD/DEAH_box_helicase_dom | Symbol:EIF4A-III |
| GO:GO:0000166 | GO:GO:0000184 | GO:GO:0001666 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0006810 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016020 | GO:GO:0016607 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0035145 | GO:GO:0051028 | GO:GO:0071013 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_188610.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF57 |
| UniProt:Q94A52 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0000163476 |
| SEG:seg | : | : | : | : | : |
Description
EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
Coordinates
chr3:+:6863661..6866646
Molecular Weight (calculated)
45847.3 Da
IEP (calculated)
6.130
GRAVY (calculated)
-0.266
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.