Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 89.81 | 93.91 |
| PGSC0003DMT400021166 | Potato | cytosol | 93.69 | 93.46 |
| PGSC0003DMT400075339 | Potato | cytosol | 93.69 | 93.46 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 93.69 | 93.46 |
| Solyc12g095990.1.1 | Tomato | nucleus | 93.2 | 92.98 |
| PGSC0003DMT400075336 | Potato | cytosol | 92.48 | 92.93 |
| CDY24057 | Canola | cytosol | 92.48 | 92.48 |
| Bra037977.1-P | Field mustard | cytosol | 92.48 | 92.48 |
| CDY33073 | Canola | cytosol | 91.99 | 91.99 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 91.99 | 91.77 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 91.75 | 91.53 |
| CDY32586 | Canola | cytosol | 83.74 | 91.27 |
| Bra029124.1-P | Field mustard | cytosol | 90.78 | 91.22 |
| AT3G13920.5 | Thale cress | cytosol | 91.26 | 89.74 |
| AT1G72730.1 | Thale cress | cytosol | 89.08 | 88.65 |
| AT3G19760.1 | Thale cress | cytosol | 60.44 | 61.03 |
| AT1G51380.1 | Thale cress | cytosol | 53.4 | 56.12 |
| TraesCS6B01G217800.1 | Wheat | cytosol | 54.85 | 53.68 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 36.16 | 48.53 |
| TraesCS6A01G186600.1 | Wheat | cytosol | 56.31 | 42.18 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 55.1 | 35.47 |
| AT5G11170.1 | Thale cress | cytosol | 35.44 | 34.19 |
| AT3G61240.1 | Thale cress | cytosol | 36.89 | 30.52 |
| AT5G11200.2 | Thale cress | cytosol | 35.44 | 30.04 |
| AT4G00660.1 | Thale cress | cytosol, mitochondrion | 35.68 | 29.11 |
| AT2G45810.1 | Thale cress | cytosol, plastid | 36.16 | 28.22 |
| OQU84655 | Sorghum | cytosol | 50.97 | 27.45 |
| AT3G53110.1 | Thale cress | cytosol | 33.01 | 27.42 |
| Os02t0221300-01 | Rice | cytosol | 55.58 | 25.99 |
| Zm00001d016350_P001 | Maize | vacuole | 28.88 | 23.61 |
| AT5G19210.2 | Thale cress | plastid | 26.21 | 22.88 |
| Zm00001d016351_P002 | Maize | nucleus | 48.06 | 22.2 |
| KXG29825 | Sorghum | cytosol | 47.09 | 22.0 |
| AT1G12770.2 | Thale cress | mitochondrion, plastid | 27.67 | 20.69 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 57.28 | 18.52 |
| TraesCS6D01G173700.3 | Wheat | cytosol | 57.52 | 17.63 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 56.07 | 17.3 |
Protein Annotations
| MapMan:17.4.2.1 | Gene3D:3.40.50.300 | EntrezGene:841868 | UniProt:A0A178W4U1 | ProteinID:AAD25605.1 | ProteinID:AEE33073.1 |
| EMBL:AF386923 | EMBL:AF428462 | EMBL:AK226344 | ArrayExpress:AT1G54270 | EnsemblPlantsGene:AT1G54270 | RefSeq:AT1G54270 |
| TAIR:AT1G54270 | RefSeq:AT1G54270-TAIR-G | EnsemblPlants:AT1G54270.1 | TAIR:AT1G54270.1 | EMBL:AY087965 | Unigene:At.195 |
| EMBL:BT008504 | InterPro:DEAD/DEAH_box_helicase_dom | Symbol:EIF4A-2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003743 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005886 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016020 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0046686 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_175829.1 | ProteinID:OAP13539.1 | InterPro:P-loop_NTPase | UniProt:P41377 |
| PFAM:PF00270 | PFAM:PF00271 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF551 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0000000B68 |
| EMBL:X65053 | : | : | : | : | : |
Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
Coordinates
chr1:+:20259547..20262266
Molecular Weight (calculated)
46765.3 Da
IEP (calculated)
5.348
GRAVY (calculated)
-0.222
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.