Factsheet for PGSC0003DMT400075339

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g095990.1.1	Tomato	nucleus	99.52	99.52
PGSC0003DMT400021166	Potato	cytosol	99.03	99.03
PGSC0003DMT400075336	Potato	cytosol	98.31	99.02
PGSC0003DMT400088289	Potato	cytosol	95.64	95.41
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	95.4	95.4
KRH52210	Soybean	cytosol, endoplasmic reticulum	95.16	95.16
Bra027387.1-P	Field mustard	cytosol	94.67	94.9
CDY39079	Canola	cytosol	94.43	94.66
CDY08220	Canola	cytosol	94.43	94.66
Bra014365.1-P	Field mustard	cytosol	94.19	94.42
Bra021517.1-P	Field mustard	cytosol	94.19	94.42
CDY02469	Canola	cytosol	93.95	94.17
Bra030893.1-P	Field mustard	cytosol	93.95	94.17
CDY10607	Canola	cytosol	93.7	94.16
Bra001530.1-P	Field mustard	cytosol	94.67	93.99
AT1G54270.1	Thale cress	cytosol	93.46	93.69
PGSC0003DMT400012518	Potato	cytosol	92.49	92.49
Bra029124.1-P	Field mustard	cytosol	89.83	90.49
CDY32586	Canola	cytosol	82.81	90.48
Bra037977.1-P	Field mustard	cytosol	90.07	90.29
CDY24057	Canola	cytosol	90.07	90.29
CDY33073	Canola	cytosol	89.59	89.81
CDY55205	Canola	cytosol	91.04	88.89
AT3G13920.5	Thale cress	cytosol	89.83	88.54
CDX97528	Canola	cytosol	91.04	88.47
CDX82505	Canola	cytosol	90.31	87.15
CDX75739	Canola	cytosol	90.56	85.78
CDY72259	Canola	cytosol	45.76	85.14
PGSC0003DMT400019783	Potato	cytosol	61.26	61.86
TraesCS6B01G217800.1	Wheat	cytosol	56.17	55.11
GSMUA_Achr9P13950_001	Banana	mitochondrion	37.05	49.84
TraesCS6A01G186600.1	Wheat	cytosol	58.11	43.64
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	56.66	36.56
PGSC0003DMT400052757	Potato	cytosol	35.84	34.58
PGSC0003DMT400053566	Potato	cytosol	35.35	34.19
OQU84655	Sorghum	cytosol	52.3	28.24
PGSC0003DMT400022137	Potato	nucleus	33.9	27.24
Os02t0221300-01	Rice	cytosol	56.17	26.33
Zm00001d016350_P001	Maize	vacuole	30.27	24.8
PGSC0003DMT400023224	Potato	nucleus	18.4	23.68
Zm00001d016351_P002	Maize	nucleus	49.64	22.98
KXG29825	Sorghum	cytosol	48.18	22.56
PGSC0003DMT400007864	Potato	golgi, mitochondrion, plastid	26.15	19.71
TraesCS6A01G186800.1	Wheat	cytosol	59.32	19.23
TraesCS6D01G173700.3	Wheat	cytosol	59.56	18.3
TraesCS6B01G217700.1	Wheat	cytosol	58.11	17.98

Protein Annotations

EntrezGene:102595069	MapMan:17.4.2.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1CUZ9
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG402029299	PGSC:PGSC0003DMG402029299	EnsemblPlants:PGSC0003DMT400075339
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF365
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296D8AF
RefSeq:XP_006342504.1	:	:	:	:	:

Description

Eukaryotic initiation factor 4A-2 [Source:PGSC_GENE;Acc:PGSC0003DMG402029299]

Coordinates

chr12:-:57796792..57801851

Molecular Weight (calculated)

46846.4 Da

IEP (calculated)

5.360

GRAVY (calculated)

-0.233

Length

413 amino acids

Sequence
(BLAST)

001: MAGSAPEGSQ FDARQFDAKM TELLGTEQQE FFTSYDEVYD SFDAMGLQEN LLRGIYAYGF EKPSAIQQRG IVPFCKGLDV IQQAQSGTGK TATFCSGVLQ
101: QLDYSLVECQ ALVLAPTREL AQQIEKVMRA LGDYLGVKVH ACVGGTSVRE DQRILQSGVH VVVGTPGRVF DMLRRQSLRP DHIKMFVLDE ADEMLSRGFK
201: DQIYDIFQLL PPKIQVGVFS ATMPPEALEI TRKFMNKPVR ILVKRDELTL EGIKQFYVNV DKEEWKLETL CDLYETLAIT QSVIFVNTRR KVDWLTDKMR
301: GRDHTVSATH GDMDQNTRDI IMREFRSGSS RVLITTDLLA RGIDVQQVSL VINYDLPTQP ENYLHRIGRS GRFGRKGVAI NFVTKDDERM LFDIQKFYNV
401: VVEELPANVA DLL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.