Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G354900.1 | |
| TraesCS2B01G373600.1 | |
| TraesCS2D01G353600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | TraesCS2A01G354900.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2B01G373600.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2D01G353600.1 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G186800.1 | Wheat | cytosol | 91.74 | 96.78 |
| TraesCS6B01G217700.1 | Wheat | cytosol | 94.05 | 94.68 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 40.7 | 85.47 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 17.78 | 60.66 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 5.51 | 60.16 |
| PGSC0003DMT400075339 | Potato | cytosol | 18.3 | 59.56 |
| Solyc12g095990.1.1 | Tomato | nucleus | 18.3 | 59.56 |
| TraesCS7D01G412200.1 | Wheat | golgi, nucleus | 18.3 | 59.42 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 18.15 | 59.08 |
| PGSC0003DMT400075336 | Potato | cytosol | 18.01 | 59.02 |
| PGSC0003DMT400021166 | Potato | cytosol | 18.08 | 58.84 |
| Solyc07g040750.1.1 | Tomato | cytosol | 18.08 | 58.84 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 18.08 | 58.84 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 18.01 | 58.6 |
| Bra021517.1-P | Field mustard | cytosol | 17.86 | 58.25 |
| CDY39079 | Canola | cytosol | 17.86 | 58.25 |
| Bra027387.1-P | Field mustard | cytosol | 17.78 | 58.01 |
| Bra014365.1-P | Field mustard | cytosol | 17.71 | 57.77 |
| CDY08220 | Canola | cytosol | 17.71 | 57.77 |
| AT1G54270.1 | Thale cress | cytosol | 17.63 | 57.52 |
| CDY10607 | Canola | cytosol | 17.56 | 57.42 |
| CDY02469 | Canola | cytosol | 17.56 | 57.28 |
| Bra030893.1-P | Field mustard | cytosol | 17.56 | 57.28 |
| Bra001530.1-P | Field mustard | cytosol | 17.71 | 57.21 |
| CDY32586 | Canola | cytosol | 16.07 | 57.14 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 3.57 | 57.14 |
| Os02t0221300-01 | Rice | cytosol | 37.35 | 56.98 |
| Bra029124.1-P | Field mustard | cytosol | 17.26 | 56.59 |
| TraesCS6D01G105000.1 | Wheat | endoplasmic reticulum, vacuole | 18.53 | 56.33 |
| Bra037977.1-P | Field mustard | cytosol | 17.11 | 55.83 |
| AT1G72730.1 | Thale cress | cytosol | 17.19 | 55.8 |
| CDY24057 | Canola | cytosol | 17.04 | 55.58 |
| CDY67069 | Canola | cytosol | 4.17 | 55.45 |
| CDY33073 | Canola | cytosol | 16.89 | 55.1 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.49 | 55.04 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.49 | 55.04 |
| AT3G13920.5 | Thale cress | cytosol | 16.89 | 54.18 |
| CDY55205 | Canola | cytosol | 17.04 | 54.14 |
| CDY72259 | Canola | cytosol | 8.93 | 54.05 |
| CDX97528 | Canola | cytosol | 16.89 | 53.41 |
| CDX82505 | Canola | cytosol | 16.82 | 52.8 |
| OQU84655 | Sorghum | cytosol | 29.76 | 52.29 |
| CDX75739 | Canola | cytosol | 16.89 | 52.06 |
| CDY11154 | Canola | cytosol | 7.37 | 49.01 |
| Zm00001d016351_P002 | Maize | nucleus | 31.03 | 46.75 |
| KXG29825 | Sorghum | cytosol | 29.99 | 45.69 |
| TraesCS2D01G554300.1 | Wheat | nucleus | 12.8 | 44.33 |
| CDY54037 | Canola | cytosol | 8.63 | 43.45 |
| TraesCS2D01G553400.1 | Wheat | cytosol | 12.8 | 42.47 |
| TraesCS6D01G401900.1 | Wheat | nucleus | 13.02 | 42.37 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 9.67 | 42.35 |
| CDY53867 | Canola | cytosol | 12.87 | 41.0 |
| CDX72939 | Canola | mitochondrion, nucleus | 12.8 | 36.91 |
| Zm00001d016350_P001 | Maize | vacuole | 12.72 | 33.93 |
| Bra016037.1-P | Field mustard | cytosol | 18.3 | 33.84 |
| TraesCS3D01G204400.1 | Wheat | cytosol | 9.67 | 30.37 |
| TraesCS1D01G451300.1 | Wheat | cytosol | 9.3 | 29.55 |
| TraesCS2D01G366700.1 | Wheat | cytosol | 9.67 | 25.59 |
| CDY68148 | Canola | nucleus | 13.99 | 25.44 |
| TraesCS6D01G219400.1 | Wheat | cytosol | 9.9 | 25.43 |
| TraesCS1D01G164500.1 | Wheat | cytosol | 9.6 | 24.52 |
| TraesCS4D01G272900.1 | Wheat | cytosol | 8.78 | 23.23 |
| TraesCS5D01G532700.1 | Wheat | cytosol | 7.81 | 22.01 |
| TraesCS3D01G530600.1 | Wheat | plastid | 6.77 | 20.27 |
| TraesCS6D01G216300.1 | Wheat | mitochondrion | 6.32 | 15.8 |
| CDY49860 | Canola | cytosol | 0.97 | 10.4 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF4283 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF14111 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF534 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6D01G173700 |
| EnsemblPlants:TraesCS6D01G173700.3 | TIGR:cd00079 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:+:162950874..162956381
Molecular Weight (calculated)
148510.0 Da
IEP (calculated)
4.633
GRAVY (calculated)
-0.499
Length
1344 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGCNSRENKA APEQKITTLS SKKKCFACKE TSHNLDQCRI KDKLGTAAQL FGHSTRFPFY MIQPSKEVVE NEKFYYHCLL ITSNACNLDP AAVKIELNKF
0101: WKLTDDWYIK REGRQNFVAS FNSEDDLLSC LNPPNIETFL DEKEVNFTVA RWDEGDGEKL DLIREWLLVY GVPGAYRNWK ELYQVASAVG VLLEVDEESL
0201: ESGDKEPIRL RIALGSLVGA PFSYHFVFGW SSRLVKFMIE DKARRIEGQW KEVEERKVSV MKEYADIREE GIEVPPETPN KRMDLEGTGI DFAGNYSLDF
0301: GTCSRKECKE LKTTERNGNI MKEYADIREE GIEVPAETLN EGMDLEGTEV DFAGNYSLDF RSCSGKECKE ELKTTEGNGS VMMEYADIRE EGIEVPAETL
0401: NEGMDLEGTG VDFTCNYSLD FRSCSGKECK EEPKITEGNG SVMMEYADIR EEGIEVPPET LNKGMDLEGT GVDFAGNYSL DFGSCPGKEC KEELKTTERN
0501: GSVMKEYADI REEGIEVPLE TLNKGMDLEG TGVDFAGNYS LDFGSCLGKE CKEEPKTTET GTLLEVAKFI PELRADEEIE ENSISAMAAT TTNSKKAAEG
0601: GQSPSESSAR GDHMSGLEDC SDKKHQKKLM ACDMATFLQV SKFTEEFKTD GEIKENNASA IVGTRTNSEG ATEDIPKAIE DMATLLQASK FTEELRTDRE
0701: IKENNASAIL GTRTNSERAT EDITKATEDM ATSLQVSKFT EELRTNGEIK ENNASAIVDT RTNSERATED VPKAEGGQSI SGSSTSTSLI EEVFRGHKPS
0801: IKNVYTRRDR KQKKSTEGST LCANISSDSA HEGLQKPPIK TMYEGSDPKQ KGSTGGQVAS KELNKGINPG SSSHATRIAT STCNMLDSES LLEKEHEKEM
0901: KMAETAAKTV GAEGAQSIKG SSACMLRVTQ TKGVDMAGTT PEGAWFDGKQ PVSKMTTRLT QFYEEFNTYN EIYDSFVEMG LQENLLKGIY AYGLEKPSLV
1001: HQRGIVPLCK GLDVIQQSLS GTTVTLACGV LQRLDYGSTE CQALVLVPTR DLAQETEKVI GALGQWLGVK AHACLGGTSV REHKQILSSS TQVIVATPSR
1101: ALDMLRTRAL CPDNVRMFVL DEADEILAGG LKNQIYDIIQ LLPAKIQFAV FSATMSNEAL ELCRKCMNKP MKIIVPKDEE LEGFSVKQFH VKAEDEELKF
1201: EKLCDLFDTM AVTQNIIFVN ARRKVESLAE KISGRGYTVS ASHGGMDQHA RDVAVQDLRS GSSRVLVTTD LRGADALQVP VVINYDLPTQ PVQYLRHVRR
1301: SGQPGGTGVA ISFVARADER VLSDIQRFCS TQLAELPSDV ADLL
0101: WKLTDDWYIK REGRQNFVAS FNSEDDLLSC LNPPNIETFL DEKEVNFTVA RWDEGDGEKL DLIREWLLVY GVPGAYRNWK ELYQVASAVG VLLEVDEESL
0201: ESGDKEPIRL RIALGSLVGA PFSYHFVFGW SSRLVKFMIE DKARRIEGQW KEVEERKVSV MKEYADIREE GIEVPPETPN KRMDLEGTGI DFAGNYSLDF
0301: GTCSRKECKE LKTTERNGNI MKEYADIREE GIEVPAETLN EGMDLEGTEV DFAGNYSLDF RSCSGKECKE ELKTTEGNGS VMMEYADIRE EGIEVPAETL
0401: NEGMDLEGTG VDFTCNYSLD FRSCSGKECK EEPKITEGNG SVMMEYADIR EEGIEVPPET LNKGMDLEGT GVDFAGNYSL DFGSCPGKEC KEELKTTERN
0501: GSVMKEYADI REEGIEVPLE TLNKGMDLEG TGVDFAGNYS LDFGSCLGKE CKEEPKTTET GTLLEVAKFI PELRADEEIE ENSISAMAAT TTNSKKAAEG
0601: GQSPSESSAR GDHMSGLEDC SDKKHQKKLM ACDMATFLQV SKFTEEFKTD GEIKENNASA IVGTRTNSEG ATEDIPKAIE DMATLLQASK FTEELRTDRE
0701: IKENNASAIL GTRTNSERAT EDITKATEDM ATSLQVSKFT EELRTNGEIK ENNASAIVDT RTNSERATED VPKAEGGQSI SGSSTSTSLI EEVFRGHKPS
0801: IKNVYTRRDR KQKKSTEGST LCANISSDSA HEGLQKPPIK TMYEGSDPKQ KGSTGGQVAS KELNKGINPG SSSHATRIAT STCNMLDSES LLEKEHEKEM
0901: KMAETAAKTV GAEGAQSIKG SSACMLRVTQ TKGVDMAGTT PEGAWFDGKQ PVSKMTTRLT QFYEEFNTYN EIYDSFVEMG LQENLLKGIY AYGLEKPSLV
1001: HQRGIVPLCK GLDVIQQSLS GTTVTLACGV LQRLDYGSTE CQALVLVPTR DLAQETEKVI GALGQWLGVK AHACLGGTSV REHKQILSSS TQVIVATPSR
1101: ALDMLRTRAL CPDNVRMFVL DEADEILAGG LKNQIYDIIQ LLPAKIQFAV FSATMSNEAL ELCRKCMNKP MKIIVPKDEE LEGFSVKQFH VKAEDEELKF
1201: EKLCDLFDTM AVTQNIIFVN ARRKVESLAE KISGRGYTVS ASHGGMDQHA RDVAVQDLRS GSSRVLVTTD LRGADALQVP VVINYDLPTQ PVQYLRHVRR
1301: SGQPGGTGVA ISFVARADER VLSDIQRFCS TQLAELPSDV ADLL
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.