Factsheet for TraesCS2D01G553400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G552800.1	Wheat	cytosol	87.9	96.48
TraesCS2B01G584200.1	Wheat	mitochondrion	95.8	95.33
TraesCS2D01G554300.1	Wheat	nucleus	91.11	95.1
TraesCS6D01G401900.1	Wheat	nucleus	93.33	91.53
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	87.41	87.62
Os01t0639100-01	Rice	nucleus	87.16	87.38
Zm00001d051840_P003	Maize	extracellular, mitochondrion	87.41	86.98
EES07819	Sorghum	cytosol	87.16	86.73
GSMUA_Achr9P23810_001	Banana	cytosol	82.22	85.82
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	81.23	84.14
PGSC0003DMT400019783	Potato	cytosol	82.96	82.15
VIT_06s0080g00550.t01	Wine grape	cytosol	83.7	81.69
KRH12197	Soybean	nucleus	81.73	81.53
KRH37217	Soybean	endoplasmic reticulum	81.48	81.08
AT3G19760.1	Thale cress	cytosol	80.74	80.15
Bra022449.1-P	Field mustard	cytosol	80.74	80.15
CDY33416	Canola	cytosol	80.74	80.15
CDY24617	Canola	cytosol	80.74	80.15
Zm00001d018542_P006	Maize	cytosol	87.41	79.91
CDY51692	Canola	cytosol	80.49	79.9
CDY42205	Canola	cytosol	80.49	79.9
Bra038231.1-P	Field mustard	cytosol	80.49	79.9
Bra032127.1-P	Field mustard	cytosol	80.49	79.9
CDY22956	Canola	cytosol	80.49	79.9
CDX82280	Canola	cytosol	80.25	79.66
GSMUA_Achr3P27120_001	Banana	cytosol	61.48	74.77
CDY58940	Canola	cytosol	67.41	67.57
CDY03623	Canola	cytosol	67.41	67.57
Bra014267.1-P	Field mustard	cytosol	67.41	67.57
AT1G51380.1	Thale cress	cytosol	65.19	67.35
CDY22577	Canola	cytosol	23.46	63.76
TraesCS7D01G412200.1	Wheat	golgi, nucleus	62.47	61.11
TraesCS6D01G105000.1	Wheat	endoplasmic reticulum, vacuole	62.96	57.69
TraesCS3D01G204400.1	Wheat	cytosol	32.1	30.37
TraesCS1D01G451300.1	Wheat	cytosol	30.62	29.31
TraesCS2D01G366700.1	Wheat	cytosol	34.81	27.76
TraesCS4D01G272900.1	Wheat	cytosol	33.58	26.77
TraesCS6D01G219400.1	Wheat	cytosol	34.57	26.77
TraesCS5D01G532700.1	Wheat	cytosol	30.86	26.21
TraesCS1D01G164500.1	Wheat	cytosol	33.58	25.86
TraesCS3D01G530600.1	Wheat	plastid	21.73	19.6
TraesCS6D01G216300.1	Wheat	mitochondrion	22.47	16.91
TraesCS6D01G173700.3	Wheat	cytosol	42.47	12.8

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF57	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2D01G553400	EnsemblPlants:TraesCS2D01G553400.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:628186879..628191420

Molecular Weight (calculated)

44838.3 Da

IEP (calculated)

6.415

GRAVY (calculated)

-0.118

Length

405 amino acids

Sequence
(BLAST)

001: MAMAAAAGSS RRVRMDDDEL TFETSAGLEV VGSFDAMGIR EDLLRGIYGY GFEKPSAIQQ RAVVPIIAGR DVIAQAQSGT GKTSMVSLSV CQLVDTNIHE
101: VQALILSPTR ELATQTERVM QAVGNHMSVS VHACVGGKSI GEDIRKLEAG VHVVSGTPGR VCDMIKRRTL RTRAIKLLVL DEADEMLTRG FKDQIYDVYR
201: YXXXXXXVVL ISATLPHDIL EITSKFMTDP VRVLVKRDEL TLEGIKQFFV AVEKEEWKFD TLCDLYDTLT ITQAVIFCNT KRKVDWLTER MRTNNFTVSA
301: MHGDMPQKER DAIMSEFRSG TTGVLITTDV WARGLDVQQV SLVINYDLPN NRELYIHRIG RSGRFGRKGV AINFVRKDDI RILRDIEQYY STQIDEMPMN
401: VADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.