Factsheet for Bra038231.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42205	Canola	cytosol	100.0	100.0
Bra022449.1-P	Field mustard	cytosol	99.75	99.75
Bra032127.1-P	Field mustard	cytosol	99.26	99.26
AT3G19760.1	Thale cress	cytosol	96.57	96.57
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	83.58	87.21
GSMUA_Achr9P23810_001	Banana	cytosol	82.35	86.6
KRH12197	Soybean	nucleus	85.29	85.71
VIT_06s0080g00550.t01	Wine grape	cytosol	87.01	85.54
KRH37217	Soybean	endoplasmic reticulum	85.29	85.5
Os03t0566800-01	Rice	cytosol, nucleus, plasma membrane	84.07	84.9
TraesCS2A01G552800.1	Wheat	cytosol	76.72	84.82
EES07819	Sorghum	cytosol	84.56	84.77
Os01t0639100-01	Rice	nucleus	83.82	84.65
Zm00001d051840_P003	Maize	extracellular, mitochondrion	84.07	84.28
PGSC0003DMT400019783	Potato	cytosol	84.31	84.11
TraesCS2B01G584200.1	Wheat	mitochondrion	81.62	81.82
TraesCS2D01G554300.1	Wheat	nucleus	77.7	81.7
HORVU6Hr1G094560.1	Barley	cytosol	81.86	81.07
TraesCS6A01G416700.1	Wheat	nucleus	81.62	80.63
TraesCS6D01G401900.1	Wheat	nucleus	81.62	80.63
TraesCS2D01G553400.1	Wheat	cytosol	79.9	80.49
TraesCS6B01G472700.1	Wheat	nucleus	81.13	80.34
GSMUA_Achr3P27120_001	Banana	cytosol	63.97	78.38
Zm00001d018542_P006	Maize	cytosol	84.07	77.43
Bra014267.1-P	Field mustard	cytosol	75.49	76.24
HORVU3Hr1G015460.1	Barley	cytosol	25.74	68.63
HORVU3Hr1G015500.1	Barley	cytosol	25.74	68.63
HORVU3Hr1G050890.1	Barley	cytosol	25.98	65.43
Bra030892.1-P	Field mustard	cytosol	10.54	63.24
Bra027387.1-P	Field mustard	cytosol	61.27	60.68
Bra021517.1-P	Field mustard	cytosol	61.03	60.44
Bra014365.1-P	Field mustard	cytosol	60.78	60.19
Bra001530.1-P	Field mustard	cytosol	61.27	60.1
Bra030893.1-P	Field mustard	cytosol	60.54	59.95
Bra029124.1-P	Field mustard	cytosol	59.31	59.02
Bra037977.1-P	Field mustard	cytosol	59.31	58.74
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.8	57.14
Bra008527.1-P	Field mustard	cytosol	29.66	36.67
Bra016037.1-P	Field mustard	cytosol	59.56	33.42
Bra023311.1-P	Field mustard	cytosol	33.09	31.62
Bra023312.1-P	Field mustard	cytosol	32.84	30.73
Bra008984.1-P	Field mustard	cytosol	31.37	30.05
Bra007587.1-P	Field mustard	cytosol	34.56	29.81
Bra003442.1-P	Field mustard	cytosol	34.56	29.56
Bra000965.1-P	Field mustard	cytosol	35.78	28.46
Bra037351.1-P	Field mustard	cytosol	35.54	28.43
Bra028547.1-P	Field mustard	cytosol	33.58	27.9
Bra008983.1-P	Field mustard	cytosol	31.62	27.33
Bra040687.1-P	Field mustard	cytosol	33.09	27.22
Bra039312.1-P	Field mustard	cytosol	33.58	26.5
Bra006091.1-P	Field mustard	cytosol	31.62	24.62
Bra023712.1-P	Field mustard	plastid	24.26	20.71

Protein Annotations

MapMan:17.3.1.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra038231	EnsemblPlants:Bra038231.1	EnsemblPlants:Bra038231.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4FAW6	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF57	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002544AD0
SEG:seg	:	:	:	:	:

Description

AT3G19760 (E=9e-220) | eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative

Coordinates

chrA01:-:21431117..21433252

Molecular Weight (calculated)

45990.5 Da

IEP (calculated)

5.779

GRAVY (calculated)

-0.307

Length

408 amino acids

Sequence
(BLAST)

001: MAEANPGRGG GRRGGGPMDD DKLVFETTEG IEPITNFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQIVDTS
101: SREVQALILS PTRELASQTE KTIQAIGLHA NIQAHACIGG KSVGEDIRKL ENGVHVVSGT PGRVCDMIKR RSLRTRGIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDWL SEKMRTNNFT
301: VSSMHGDMPQ KERDEIMNQF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Best Arabidopsis Sequence Match ( AT3G19760.1 )
(BLAST)

001: MATANPGRGG GRRGGGAMDD DKLVFETTDG IEPITSFNDM GIKEDVLRGV YEYGFEKPSA IQQRAVMPIL QGRDVIAQAQ SGTGKTSMIA LSVCQVVDTS
101: SREVQALILS PTRELATQTE KTIQAIGLHA NIQAHACIGG NSVGEDIRKL EHGVHVVSGT PGRVCDMIKR RSLRTRAIKL LILDESDEML SRGFKDQIYD
201: VYRYLPPDLQ VCLVSATLPH EILEMTSKFM TEPVKILVKR DELTLEGIKQ FFVAVEKEEW KFDTLCDLYD TLTITQAVIF CNTKRKVDYL SEKMRSHNFT
301: VSSMHGDMPQ KERDAIMNEF RSGDSRVLIT TDVWARGIDV QQVSLVINYD LPNNRELYIH RIGRSGRFGR KGVAINFVKS DDIKILRDIE QYYSTQIDEM
401: PMNVADLI

Arabidopsis Description

EIF4A3Eukaryotic initiation factor 4A-III homolog [Source:UniProtKB/Swiss-Prot;Acc:Q94A52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.