Factsheet for Bra000965.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74342	Canola	cytosol	99.22	99.03
Bra037351.1-P	Field mustard	cytosol	93.57	94.12
AT4G00660.1	Thale cress	cytosol, mitochondrion	92.4	93.86
Bra008527.1-P	Field mustard	cytosol	58.87	91.52
KRH04755	Soybean	cytosol	46.2	89.43
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	81.09	86.67
VIT_15s0046g03200.t01	Wine grape	cytosol	82.26	85.95
KRH48170	Soybean	endoplasmic reticulum	83.43	85.09
KRH48173	Soybean	mitochondrion	82.65	84.8
Solyc10g017530.2.1	Tomato	nucleus	81.09	84.73
KRH65098	Soybean	endoplasmic reticulum, nucleus	82.85	84.66
KRH65096	Soybean	nucleus	81.87	84.17
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	79.92	83.33
Solyc01g094350.2.1	Tomato	nucleus	80.7	83.13
GSMUA_Achr2P10560_001	Banana	cytosol	78.75	83.13
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	54.39	82.06
Os04t0533000-02	Rice	cytosol	78.75	81.12
GSMUA_Achr5P12220_001	Banana	cytosol	77.39	80.69
TraesCS2B01G387200.1	Wheat	cytosol	78.17	80.36
Bra007587.1-P	Field mustard	cytosol	74.07	80.34
Os02t0641800-02	Rice	plasma membrane, plastid	79.53	80.31
TraesCS2A01G370200.2	Wheat	cytosol	78.36	80.24
Bra003442.1-P	Field mustard	cytosol	74.46	80.08
TraesCS2D01G366700.1	Wheat	cytosol	78.17	78.94
HORVU6Hr1G060630.1	Barley	cytosol	79.34	78.57
TraesCS6B01G265300.1	Wheat	cytosol	79.53	78.01
TraesCS6A01G236800.1	Wheat	cytosol	79.34	77.82
TraesCS6D01G219400.1	Wheat	cytosol	79.14	77.63
Zm00001d051268_P004	Maize	extracellular	78.95	77.59
Bra039312.1-P	Field mustard	cytosol	77.78	77.18
Zm00001d017384_P008	Maize	cytosol	78.56	76.76
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	75.05	76.54
EER91410	Sorghum	cytosol	75.24	76.13
EER91411	Sorghum	cytosol	75.05	75.94
KRH40488	Soybean	cytosol	79.73	75.88
Os10t0503700-01	Rice	plasma membrane	76.61	75.43
TraesCS1A01G174600.1	Wheat	cytosol	76.41	74.67
TraesCS1B01G189900.1	Wheat	cytosol	76.22	74.48
TraesCS1D01G164500.1	Wheat	cytosol	76.02	74.14
GSMUA_Achr11P...	Banana	cytosol	79.92	72.57
HORVU1Hr1G046020.1	Barley	cytosol	76.02	69.15
Solyc05g048850.2.1	Tomato	mitochondrion	72.32	69.09
Bra030892.1-P	Field mustard	cytosol	5.26	39.71
Bra030893.1-P	Field mustard	cytosol	29.24	36.41
Bra014365.1-P	Field mustard	cytosol	29.04	36.16
Bra037977.1-P	Field mustard	cytosol	28.85	35.92
Bra027387.1-P	Field mustard	cytosol	28.85	35.92
Bra021517.1-P	Field mustard	cytosol	28.85	35.92
Bra029124.1-P	Field mustard	cytosol	28.66	35.85
Bra001530.1-P	Field mustard	cytosol	29.04	35.82
Bra022449.1-P	Field mustard	cytosol	28.46	35.78
Bra032127.1-P	Field mustard	cytosol	28.46	35.78
Bra038231.1-P	Field mustard	cytosol	28.46	35.78
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.04	34.89
Bra014267.1-P	Field mustard	cytosol	27.1	34.41
Bra023311.1-P	Field mustard	cytosol	28.27	33.96
Bra023312.1-P	Field mustard	cytosol	27.68	32.57
Bra008984.1-P	Field mustard	cytosol	26.9	32.39
Bra008983.1-P	Field mustard	cytosol	26.9	29.24
Bra006091.1-P	Field mustard	cytosol	27.68	27.1
Bra040687.1-P	Field mustard	cytosol	24.95	25.81
Bra028547.1-P	Field mustard	cytosol	24.17	25.25
Bra023712.1-P	Field mustard	plastid	19.88	21.34
Bra016037.1-P	Field mustard	cytosol	28.66	20.22

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra000965	EnsemblPlants:Bra000965.1	EnsemblPlants:Bra000965.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4C9T6	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF555	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002540771
SEG:seg	:	:	:	:	:

Description

AT4G00660 (E=1e-233) | DEAD/DEAH box helicase, putative

Coordinates

chrA03:-:14156582..14159266

Molecular Weight (calculated)

58291.9 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.449

Length

513 amino acids

Sequence
(BLAST)

001: MNNNNNNNRG GGGRYPPGIG AGRGAINPNP NFQSRPGYQQ PQQPQYVQRG AYSHQQQQFQ QATSQPPRQY HQQQHQQQWL PRPQISSGNS NGGGEGDAVV
101: EVEKTVLSDT NSEDWKARLK LPAPDTRYRT EDVTATKGNE FEDYFLKREL LMGIYEKGFE RPSPIQEESI PIALTGRDIL ARAKNGTGKT AAFCIPVLEK
201: IDQDNNVIQA VIIVPTRELA LQTSQVCKEL GKHLKIQVMV TTGGTSLKDD IMRLYQPVHL LVGTPGRILD LTKKGVCVLK DCSVLAMDEA DKLLSQEFQP
301: SVEHLISFLP QNRQILMFSA TFPVTVKYFK DRFLTNPYII NLMDELTLKG ITQFYAFVEE RQKIHCLNTL FSKLQINQSI IFCNSVNRVE LLAKKITELG
401: YSCFYIHAKM LQDHRNRVFH DFRNGACRNL VCTDLFTRGI DIQAVNVVIN FDFPKNAETY LHRVGRSGRF GHLGLAVNLI TYEDRFNLYR IEQELGTEIK
501: QIPPHIDQAI YCQ

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.