Factsheet for Solyc10g017530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g009980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	Solyc05g009980.2.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54061	Canola	cytosol	59.47	89.57
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	87.17	89.17
Solyc01g094350.2.1	Tomato	nucleus	89.82	88.55
VIT_15s0046g03200.t01	Wine grape	cytosol	88.39	88.39
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	87.58	87.4
CDY45702	Canola	cytosol	36.66	87.38
GSMUA_Achr2P10560_001	Banana	cytosol	85.74	86.63
GSMUA_Achr5P12220_001	Banana	cytosol	86.56	86.38
Bra008527.1-P	Field mustard	cytosol	57.64	85.76
Os04t0533000-02	Rice	cytosol	84.32	83.13
AT4G00660.1	Thale cress	cytosol, mitochondrion	85.34	82.97
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	57.43	82.94
CDY51147	Canola	cytosol	83.71	82.86
CDX91901	Canola	cytosol	84.52	82.83
Bra037351.1-P	Field mustard	cytosol	85.54	82.35
Os02t0641800-02	Rice	plasma membrane, plastid	84.93	82.09
CDY07205	Canola	cytosol	82.08	82.08
TraesCS2B01G387200.1	Wheat	cytosol	82.48	81.16
Bra000965.1-P	Field mustard	cytosol	84.73	81.09
HORVU6Hr1G060630.1	Barley	cytosol	85.34	80.89
CDX74342	Canola	cytosol	84.52	80.74
TraesCS2A01G370200.2	Wheat	cytosol	82.28	80.64
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	82.48	80.52
TraesCS6B01G265300.1	Wheat	cytosol	85.54	80.31
TraesCS6D01G219400.1	Wheat	cytosol	85.34	80.11
TraesCS6A01G236800.1	Wheat	cytosol	85.34	80.11
TraesCS2D01G366700.1	Wheat	cytosol	82.69	79.92
Os10t0503700-01	Rice	plasma membrane	84.52	79.65
EER91410	Sorghum	cytosol	82.08	79.49
Zm00001d051268_P004	Maize	extracellular	84.32	79.31
EER91411	Sorghum	cytosol	81.67	79.09
Zm00001d017384_P008	Maize	cytosol	84.52	79.05
Bra007587.1-P	Field mustard	cytosol	75.97	78.86
Bra003442.1-P	Field mustard	cytosol	75.97	78.2
CDY58787	Canola	cytosol	76.37	77.8
CDY48935	Canola	cytosol, plastid	75.15	77.68
CDX71756	Canola	cytosol	75.56	77.45
TraesCS1A01G174600.1	Wheat	cytosol	82.69	77.33
AT3G61240.1	Thale cress	cytosol	78.41	77.31
KRH40488	Soybean	cytosol	84.73	77.18
TraesCS1B01G189900.1	Wheat	cytosol	82.28	76.95
TraesCS1D01G164500.1	Wheat	cytosol	82.28	76.81
CDY37067	Canola	cytosol	79.23	76.27
CDY27357	Canola	cytosol, plastid	79.02	76.23
Bra039312.1-P	Field mustard	cytosol	79.23	75.24
AT2G45810.1	Thale cress	cytosol, plastid	80.24	74.62
HORVU1Hr1G046020.1	Barley	cytosol	82.69	71.99
Solyc05g048850.2.1	Tomato	mitochondrion	77.6	70.95
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	30.55	38.07
Solyc06g062800.2.1	Tomato	cytosol, nucleus, unclear	31.16	37.05
Solyc12g095990.1.1	Tomato	nucleus	30.96	36.8
Solyc07g040750.1.1	Tomato	cytosol	30.96	36.8
Solyc08g062800.2.1	Tomato	extracellular, plastid	30.75	36.56
Solyc11g033280.1.1	Tomato	cytosol, nucleus, plastid	28.51	35.81
Solyc06g066060.2.1	Tomato	nucleus	29.12	34.88
Solyc08g061000.2.1	Tomato	nucleus	29.74	30.1
Solyc04g082790.2.1	Tomato	plastid	27.9	27.45
Solyc10g085790.1.1	Tomato	nucleus	27.9	26.97
Solyc01g079800.2.1	Tomato	plastid	20.37	21.79
Solyc08g080550.1.1	Tomato	nucleus	20.57	18.43

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0010494	GO:GO:0010501	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538
GO:GO:0033962	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K4CYN1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g017530.2	EnsemblPlants:Solyc10g017530.2.1	UniParc:UPI000276C393
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:5510044..5519613

Molecular Weight (calculated)

55723.3 Da

IEP (calculated)

8.515

GRAVY (calculated)

-0.349

Length

491 amino acids

Sequence
(BLAST)

001: MNPRGRYPPP GMGSGGGGGG RGGGNMYPNA NPNFQPRNPQ QYVQRGPVNQ QQQFQNQQAQ QWLRRNQLAS DSTVDEVEKT VQSEAVDQSS QDWKARLKIP
101: PADTRYRTED VTATKGNEFE DYFLKRELLM GIYEKGFERP SPIQEESIPI ALTGSDILAR AKNGTGKTAA FCIPALEKID QDVNAIQVVI LVPTRELALQ
201: TSQVCKELGK HLKIEVMVTT GGTSLKDDIM RLYQPVHLLV GTPGRILDLA RKGICVLKDC SMLVMDEADK LLSPEFQPSI VQLIRFLPAN RQVLMFSATF
301: PVTVKDFKER YLQKPYVINL MDELTLKGIT QFYAFVEERQ KLHCLNTLFS KLQINQSIIF CNSVNRVELL AKKITELGYS CFYIHAKMLQ DHRNRVFHDF
401: RNGACRNLVC TDLFTRGIDI QAVNVVINFD FPKNSETYLH RVGRSGRFGH LGLAVNLITY EDRFNLYRIE QELGTEIKQI PPHIDQAIYC L

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.