Factsheet for Solyc05g009980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107590.2.1
Solyc03g063200.2.1
Solyc07g032240.2.1
Solyc10g078750.1.1
Solyc10g080480.1.1
Solyc12g008760.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	Solyc07g032240.2.1	AT4G29510.1	21798944
AT1G26110.1	Solyc12g008760.1.1	AT4G29510.1	21798944
AT1G26110.1	Solyc01g107590.2.1	AT4G34230.1	21798944
AT1G26110.1	Solyc03g063200.2.1	AT5G06770.1	21798944
AT1G26110.1	Solyc10g078750.1.1	AT5G06770.1	21798944
AT1G26110.1	Solyc10g080480.1.1	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002103	Potato	nucleus	93.32	93.48
KRG93865	Soybean	cytosol	5.84	67.31
Zm00001d051566_P001	Maize	nucleus	9.02	60.0
VIT_01s0011g02820.t01	Wine grape	nucleus	60.93	59.25
KRH70633	Soybean	nucleus	58.6	56.98
KRH75529	Soybean	nucleus	57.43	56.3
KRH70630	Soybean	nucleus	58.1	56.13
KRH62823	Soybean	nucleus	56.76	54.84
CDY51127	Canola	nucleus	52.92	54.19
GSMUA_Achr1P20740_001	Banana	nucleus	53.09	53.99
Bra011009.1-P	Field mustard	nucleus	53.59	53.77
CDY36091	Canola	nucleus	53.42	53.6
AT1G26110.1	Thale cress	nucleus	54.59	53.52
CDY55955	Canola	nucleus	53.09	53.36
CDY20530	Canola	nucleus	53.09	52.82
GSMUA_Achr2P07060_001	Banana	nucleus	51.42	51.94
GSMUA_Achr9P00760_001	Banana	nucleus	48.75	48.59
Solyc08g075300.2.1	Tomato	nucleus, plastid	24.21	45.74
Os01t0111200-01	Rice	nucleus	44.57	43.06
TraesCS3A01G006100.1	Wheat	nucleus	45.24	40.87
EES02617	Sorghum	nucleus, plastid	44.57	40.33
HORVU3Hr1G000880.1	Barley	nucleus	44.24	40.15
Zm00001d008439_P001	Maize	plasma membrane	43.41	40.06
Zm00001d040142_P001	Maize	nucleus, plastid	42.74	39.57
TraesCS3D01G004500.1	Wheat	plastid	43.57	39.31
Zm00001d027310_P001	Maize	nucleus, plastid	17.03	32.69
Solyc03g119850.1.1	Tomato	mitochondrion	22.7	31.34
Solyc06g069280.2.1	Tomato	nucleus	34.56	29.78

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0010606	GO:GO:0016043	GO:GO:0017148	GO:GO:0019538	GO:GO:0031087	GO:GO:0033962
GO:GO:0042803	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	UniProt:K4BXH2	InterPro:LSM_dom_sf
InterPro:Lsm14-like_N	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513	PFscan:PS51536
PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	EnsemblPlantsGene:Solyc05g009980.2
EnsemblPlants:Solyc05g009980.2.1	InterPro:TFG_box	UniParc:UPI0002766E28	SEG:seg	:	:

Description

Protein decapping 5 [Source:Projected from Arabidopsis thaliana (AT1G26110) UniProtKB/Swiss-Prot;Acc:Q9C658]

Coordinates

chr5:-:4176174..4183453

Molecular Weight (calculated)

63349.8 Da

IEP (calculated)

7.819

GRAVY (calculated)

-0.636

Length

599 amino acids

Sequence
(BLAST)

001: MAAESSSARS SGSSADSYIG SLISLTSKSE IRYEGILYNI NTDESSIGLR NVRSFGTEGR KKDGPQVPPS DKTYEYILFR GSDIKDLQVK SSPPLQPTQP
101: INNDPAIIQS HYPRPPTTSA SLPAAVGGSL TDLGSHSAQP GHPGSTFQSG PPLYQPGGNM GSWGPSPPPP NAGAGGLAMP MYWQGFYGAP NGLPQMQQQS
201: LLRPPPGLAM PPSMPPSMPQ MQFSGFNSSL PTGGSSLQAP NFPEYPSSLM PTTTSLTSSS LPAATLPSTV PSLQPVAPVT ETISSAISKK ASVSAIPNST
301: LSASLPTLPP LSTSPDVNPV VLPVSNKPNP VPSPALSQSV STIVETPTPS LITPGQLLQS GPIDVPSTQS MQTSQRDVEV DQVVPAPPSE PPAPAKTEAQ
401: PPILPLPSQT RVQKTNGAPY QPRYVNFRGR GGRGMGVSRP ITKFDEDFDF MAMNEKFKKD EVWGHLGKSN REGDGNGSDE DISYNEYEDD LPKIDIQPVY
501: NKEDFFDSLS SNALDHDSNH GRTRFSEQRK IDVETFGDFS RYRGGRGGRG PGRGGRSRGS YYGRGGGYGY GYGNGNGNGT GYGYGGGRGR GRGVPSRTL

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.