Factsheet for Solyc01g107590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g109660.2.1
Solyc10g051380.1.1
Solyc10g051390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	Solyc01g109660.2.1	AT2G21660.1	21798944
AT4G34230.1	Solyc10g051380.1.1	AT2G21660.1	21798944
AT4G34230.1	Solyc10g051390.1.1	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066217	Potato	cytosol	98.32	98.32
VIT_03s0180g00260.t01	Wine grape	cytosol	84.87	84.87
KRH35742	Soybean	cytosol, nucleus	83.19	82.96
KRG91021	Soybean	cytosol, nucleus	82.91	82.91
VIT_03s0180g00250.t01	Wine grape	cytosol	81.79	81.79
AT4G34230.1	Thale cress	cytosol	78.99	78.99
CDX72466	Canola	cytosol	78.43	78.43
CDX75413	Canola	cytosol	78.43	78.43
Bra017639.1-P	Field mustard	cytosol	78.43	78.43
CDY49288	Canola	cytosol	78.15	78.15
Bra011510.1-P	Field mustard	cytosol	78.15	78.15
CDX69037	Canola	cytosol	77.59	77.59
TraesCS6B01G201600.1	Wheat	cytosol	78.15	77.5
CDY46173	Canola	cytosol	78.99	77.26
Bra022425.1-P	Field mustard	cytosol	78.99	77.26
CDX99222	Canola	cytosol	78.99	77.05
TraesCS6D01G162800.1	Wheat	cytosol	77.59	76.94
TraesCS6A01G173700.1	Wheat	cytosol	77.59	76.94
HORVU6Hr1G035420.6	Barley	cytosol	78.15	76.65
GSMUA_Achr4P12970_001	Banana	cytosol	76.19	76.19
AT3G19450.1	Thale cress	cytosol	77.87	76.16
Os02t0187800-01	Rice	cytosol	76.47	75.21
Zm00001d015618_P001	Maize	extracellular	77.31	75.2
KXG29649	Sorghum	cytosol	76.75	75.07
GSMUA_Achr4P06150_001	Banana	cytosol	73.11	73.11
Solyc11g011330.1.1	Tomato	cytosol	54.34	54.49
Solyc11g010960.1.1	Tomato	cytosol	53.5	53.2
Solyc11g011340.1.1	Tomato	cytosol	52.38	52.09
Solyc11g010980.1.1	Tomato	cytosol	51.82	51.53
Solyc11g010990.1.1	Tomato	cytosol	51.82	51.53
Solyc03g078440.2.1	Tomato	cytosol	52.38	47.83
Solyc04g048960.1.1	Tomato	endoplasmic reticulum, extracellular	21.57	47.53
Solyc02g069250.2.1	Tomato	peroxisome	47.06	46.67
Solyc03g078430.1.1	Tomato	extracellular, plastid, vacuole	27.17	46.63
Solyc02g030480.2.1	Tomato	peroxisome	45.66	45.28
Solyc08g014360.1.1	Tomato	plastid	44.82	42.11
Solyc08g048300.1.1	Tomato	cytosol	10.08	39.13
Solyc05g024320.1.1	Tomato	cytosol	19.89	33.49
Solyc12g055820.1.1	Tomato	cytosol	44.54	30.17

Protein Annotations

MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009809	GO:GO:0009987	GO:GO:0016491	GO:GO:0019748	GO:GO:0045551
GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	UniProt:K4B2X5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107
PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF1	SMART:SM00829
SUPFAM:SSF50129	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc01g107590.2	EnsemblPlants:Solyc01g107590.2.1	UniParc:UPI0002767E60	SEG:seg

Description

No Description!

Coordinates

chr1:+:95091179..95094937

Molecular Weight (calculated)

38978.3 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.082

Length

357 amino acids

Sequence
(BLAST)

001: MGSLEVEKKA IGWAARDPSG ILSPYTYTLR NTGPDDVQVK ILYCGLCHSD VHQVKNDLGM SNYPMVPGHE VVGEVVEVGP EVSKFKVGDI VGVGLLVGCC
101: KTCRPCKQDI EQYCAKKIWN CNDVYTDGKP TQGGFANFMV VEQKFVVKIP DGMAPEQAAP LLCAGVTVYS PLNHFGFNQS GLRGGILGLG GVGHMGVKIA
201: KAMGHHVTVI SSSDKKRQEA LDHLGADDYL VSSDNEKMQE AADSLDYIID TVPVNHPLEP YLSLLKVDGK LILMGVINTP LQFVSPMVML GRKSITGSFI
301: GSMKETEEVL HFCKEKGVTS QIEMVKMDYI NTAMERLEKN DVRYRFVVDV AGSKLDQ

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.