CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

cytosol: 26440083

gfp PMID: 26440083

J Li, L Wang, Q Zhang, Y Liu

College of Agriculture, Anhui Science and Technology University, Fengyang 233100, People's Republic of China. qwzhan@163.com.

PPI

Inferred distinct locusB in Crop

locusB	locations
EES16438
KXG37870

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	EES16438	AT2G21660.1	21798944
AT4G34230.1	KXG37870	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015618_P001	Maize	extracellular	96.71	96.19
TraesCS6B01G201600.1	Wheat	cytosol	86.58	87.78
TraesCS6A01G173700.1	Wheat	cytosol	86.58	87.78
HORVU6Hr1G035420.6	Barley	cytosol	87.12	87.36
Os02t0187800-01	Rice	cytosol	86.85	87.33
TraesCS6D01G162800.1	Wheat	cytosol	85.75	86.94
GSMUA_Achr4P06150_001	Banana	cytosol	76.71	78.43
VIT_03s0180g00260.t01	Wine grape	cytosol	75.89	77.59
GSMUA_Achr4P12970_001	Banana	cytosol	75.89	77.59
Solyc01g107590.2.1	Tomato	cytosol, extracellular	75.07	76.75
PGSC0003DMT400066217	Potato	cytosol	74.25	75.91
VIT_03s0180g00250.t01	Wine grape	cytosol	72.6	74.23
KRG91021	Soybean	cytosol, nucleus	72.05	73.67
KRH35742	Soybean	cytosol, nucleus	72.05	73.46
Bra022425.1-P	Field mustard	cytosol	73.42	73.42
CDY46173	Canola	cytosol	73.42	73.42
CDX99222	Canola	cytosol	73.42	73.22
Bra017639.1-P	Field mustard	cytosol	71.51	73.11
Bra011510.1-P	Field mustard	cytosol	71.51	73.11
CDX72466	Canola	cytosol	71.51	73.11
AT4G34230.1	Thale cress	cytosol	71.23	72.83
CDX69037	Canola	cytosol	71.23	72.83
CDX75413	Canola	cytosol	71.23	72.83
CDY49288	Canola	cytosol	71.23	72.83
AT3G19450.1	Thale cress	cytosol	72.33	72.33
EER98869	Sorghum	cytosol	51.51	51.93
EER96708	Sorghum	cytosol	50.96	51.67
EER98870	Sorghum	cytosol	13.42	50.0
EES10404	Sorghum	cytosol	45.21	45.58
OQU80077	Sorghum	cytosol	46.58	45.58
OQU89465	Sorghum	plastid	48.22	42.11
OQU82308	Sorghum	cytosol	43.84	42.11
EER88001	Sorghum	cytosol	40.0	41.24
OQU75993	Sorghum	cytosol	40.0	41.24
OQU79199	Sorghum	cytosol	35.89	40.68
EER88002	Sorghum	cytosol	39.45	40.68
KXG19525	Sorghum	cytosol	40.82	35.65
OQU75994	Sorghum	cytosol	14.79	30.17

Protein Annotations

MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	UniProt:A1ILL4	EMBL:AB288109	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	ProteinID:BAJ09366.1	EMBL:FJ554573	EMBL:FJ554574	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009809	GO:GO:0009987	GO:GO:0016491	GO:GO:0019748	GO:GO:0045551	GO:GO:0046872
GO:GO:0052747	GO:GO:0055114	InterPro:GroES-like_sf	EMBL:HQ668168	EMBL:JX202547	EnsemblPlants:KXG29649
ProteinID:KXG29649	ProteinID:KXG29649.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER
ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF1	SMART:SM00829	EnsemblPlantsGene:SORBI_3004G071000	SUPFAM:SSF50129
SUPFAM:SSF51735	UniParc:UPI0000EB6F82	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:5728604..5734362

Molecular Weight (calculated)

38657.6 Da

IEP (calculated)

6.229

GRAVY (calculated)

0.116

Length

365 amino acids

Sequence
(BLAST)

001: MGSLASERKV VGWAARDATG HLSPYTYTLR NTGPEDVVVK VLYCGICHTD IHQAKNHLGA SKYPMVPGHE VVGEVVEVGP EVSKYGVGDV VGVGVIVGCC
101: RECSPCKANV EQYCNKKIWS YNDVYTDGRP TQGGFASTMV VDQKFVVKIP AGLAPEQAAP LLCAGVTVYS PLKAFGLTAP GLRGGIVGLG GVGHMGVKVA
201: KAMGHHVTVI SSSSKKRAEA MDHLGADAYL VSTDAAAMAA AADSLDYIID TVPVHHPLEP YLSLLRLDGK HVLLGVIGEP LSFVSPMVML GRKAITGSFI
301: GSIDETAEVL QFCVDKGLTS QIEVVKMGYV NEALERLERN DVRYRFVVDV AGSNVEEDAA DAPSN

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.