Factsheet for VIT_03s0180g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g02610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	VIT_03s0063g02610.t01	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0180g00250.t01	Wine grape	cytosol	88.8	88.8
PGSC0003DMT400066217	Potato	cytosol	85.71	85.71
Solyc01g107590.2.1	Tomato	cytosol, extracellular	84.87	84.87
KRH35742	Soybean	cytosol, nucleus	84.31	84.08
KRG91021	Soybean	cytosol, nucleus	83.75	83.75
Bra022425.1-P	Field mustard	cytosol	83.47	81.64
CDY46173	Canola	cytosol	83.47	81.64
CDX99222	Canola	cytosol	82.91	80.87
AT4G34230.1	Thale cress	cytosol	80.39	80.39
CDX72466	Canola	cytosol	79.83	79.83
Bra017639.1-P	Field mustard	cytosol	79.83	79.83
CDX75413	Canola	cytosol	79.55	79.55
CDY49288	Canola	cytosol	79.55	79.55
CDX69037	Canola	cytosol	79.55	79.55
AT3G19450.1	Thale cress	cytosol	81.23	79.45
Bra011510.1-P	Field mustard	cytosol	79.27	79.27
GSMUA_Achr4P12970_001	Banana	cytosol	78.99	78.99
TraesCS6B01G201600.1	Wheat	cytosol	78.99	78.33
TraesCS6A01G173700.1	Wheat	cytosol	78.71	78.06
HORVU6Hr1G035420.6	Barley	cytosol	79.55	78.02
TraesCS6D01G162800.1	Wheat	cytosol	78.43	77.78
GSMUA_Achr4P06150_001	Banana	cytosol	77.31	77.31
Os02t0187800-01	Rice	cytosol	78.43	77.14
Zm00001d015618_P001	Maize	extracellular	78.15	76.02
KXG29649	Sorghum	cytosol	77.59	75.89
VIT_07s0129g01030.t01	Wine grape	cytosol, mitochondrion	66.11	67.05
VIT_00s0371g00010.t01	Wine grape	cytosol	10.92	55.71
VIT_00s0371g00100.t01	Wine grape	cytosol	55.18	54.42
VIT_00s0346g00080.t01	Wine grape	cytosol	55.18	54.42
VIT_00s0615g00020.t01	Wine grape	cytosol	54.06	53.61
VIT_00s0615g00010.t01	Wine grape	cytosol	53.5	53.06
VIT_00s0371g00050.t01	Wine grape	cytosol	53.22	52.78
VIT_00s1389g00010.t01	Wine grape	cytosol	53.22	52.78
VIT_00s0346g00110.t01	Wine grape	cytosol	53.22	52.78
VIT_04s0044g00210.t01	Wine grape	cytosol	52.66	52.37
VIT_00s0346g00100.t01	Wine grape	cytosol	52.66	52.08
VIT_00s0371g00060.t01	Wine grape	cytosol	43.7	52.0
VIT_00s0346g00120.t01	Wine grape	cytosol	52.38	51.8
VIT_04s0044g00190.t01	Wine grape	cytosol	51.54	51.25
VIT_18s0122g00450.t01	Wine grape	cytosol, plastid	53.22	50.53
VIT_00s0218g00010.t01	Wine grape	cytosol	50.98	49.59
VIT_00s0371g00040.t01	Wine grape	cytosol	29.97	47.56
VIT_00s0615g00030.t01	Wine grape	cytosol	52.94	47.49
VIT_10s0003g04910.t01	Wine grape	cytosol	47.34	46.56
VIT_00s0174g00270.t01	Wine grape	cytosol	46.22	46.22
VIT_00s0174g00220.t01	Wine grape	golgi	23.53	45.9
VIT_02s0025g03100.t01	Wine grape	cytosol	45.1	45.35
VIT_18s0001g14910.t01	Wine grape	cytosol	44.82	44.44
VIT_00s0174g00210.t01	Wine grape	cytosol	16.25	43.61
VIT_00s0346g00090.t01	Wine grape	cytosol, peroxisome, plastid	41.18	43.49
VIT_18s0001g01160.t01	Wine grape	mitochondrion	18.49	40.99
VIT_00s0371g00020.t01	Wine grape	cytosol	6.16	40.0
VIT_00s0371g00070.t01	Wine grape	cytosol	40.62	39.73
VIT_00s0174g00280.t01	Wine grape	extracellular	38.66	38.44
VIT_02s0025g03110.t01	Wine grape	cytosol	8.12	37.66

Protein Annotations

EntrezGene:100257308	wikigene:100257308	MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	ProteinID:CBI40258	ProteinID:CBI40258.3	UniProt:D7UBZ3	EMBL:FN596754
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	EntrezGene:LOC100257308	wikigene:LOC100257308
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR42683
PANTHER:PTHR42683:SF1	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGR:TC60779	UniParc:UPI00015C90C2
ArrayExpress:VIT_03s0180g00260	EnsemblPlantsGene:VIT_03s0180g00260	EnsemblPlants:VIT_03s0180g00260.t01	unigene:Vvi.841	RefSeq:XP_002285406	RefSeq:XP_002285406.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:6212329..6214039

Molecular Weight (calculated)

39011.4 Da

IEP (calculated)

5.598

GRAVY (calculated)

-0.023

Length

357 amino acids

Sequence
(BLAST)

001: MGSLETEKTI IGWAARDPSG VLSPYTYTLR NTGPEDVLIK VTYCGICHTD LHQIKNDLGM SHYPMVPGHE VVGEVVEVGS DVSKVRVGDC VGVGVIVGCC
101: RSCRPCQSDI EQYCSKKIWS YNDVYTDGKP TQGGFAESMI VDQKFVLKIP DGMAPEQAAP LLCAGVTVYS PLSHFGLKKS GLRGGILGLG GVGHMGVKIA
201: KAMGHHVTVI SSSDRKREEA MDHLGADDYL VSSDSTRMQE AADSLDYIID TVPVFHPLEP YLSLLKLDGK LILMGVINTP LQFVTPMVML GRKIITGSFI
301: GSMKETEEML EFCKENGLTS MIEMVKMDYV NTALERLEKN DVRYRFVVDV AGSKLDQ

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.