Factsheet for VIT_18s0001g14910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11490_001	Banana	cytosol	78.61	79.05
Solyc02g030480.2.1	Tomato	peroxisome	78.33	78.33
PGSC0003DMT400033637	Potato	peroxisome	77.5	77.5
KRH17471	Soybean	cytosol	75.0	74.79
Os04t0229100-01	Rice	cytosol	74.72	74.72
KRH05985	Soybean	cytosol	72.5	72.1
EES10404	Sorghum	cytosol	72.22	71.82
HORVU2Hr1G010840.1	Barley	peroxisome	70.56	70.95
TraesCS2D01G064900.1	Wheat	peroxisome	70.0	70.39
TraesCS2A01G070900.1	Wheat	peroxisome	70.0	70.19
Zm00001d004443_P001	Maize	extracellular	70.0	69.81
TraesCS2A01G066400.1	Wheat	peroxisome	69.72	69.72
TraesCS2A01G066500.1	Wheat	peroxisome	69.72	69.72
TraesCS2B01G084600.1	Wheat	peroxisome	69.44	69.44
TraesCS2D01G069800.1	Wheat	peroxisome	69.17	69.36
TraesCS2B01G084500.1	Wheat	cytosol	54.72	68.17
TraesCS2B01G078600.1	Wheat	cytosol	60.56	67.28
TraesCS2B01G078700.1	Wheat	cytosol	70.56	64.63
VIT_18s0001g01160.t01	Wine grape	mitochondrion	28.33	63.35
VIT_04s0044g00190.t01	Wine grape	cytosol	59.44	59.61
VIT_00s0346g00080.t01	Wine grape	cytosol	59.17	58.84
HORVU2Hr1G010830.1	Barley	peroxisome	70.0	58.74
VIT_00s0371g00100.t01	Wine grape	cytosol	58.89	58.56
VIT_04s0044g00210.t01	Wine grape	cytosol	58.06	58.22
VIT_00s0371g00050.t01	Wine grape	cytosol	57.78	57.78
VIT_00s0346g00110.t01	Wine grape	cytosol	57.5	57.5
VIT_00s0615g00020.t01	Wine grape	cytosol	57.5	57.5
VIT_00s1389g00010.t01	Wine grape	cytosol	57.22	57.22
VIT_00s0615g00010.t01	Wine grape	cytosol	57.22	57.22
VIT_00s0174g00220.t01	Wine grape	golgi	28.33	55.74
VIT_00s0371g00040.t01	Wine grape	cytosol	33.89	54.22
VIT_00s0346g00100.t01	Wine grape	cytosol	53.06	52.91
VIT_00s0218g00010.t01	Wine grape	cytosol	53.89	52.86
VIT_18s0122g00450.t01	Wine grape	cytosol, plastid	55.0	52.66
VIT_10s0003g04910.t01	Wine grape	cytosol	53.06	52.62
VIT_00s0346g00120.t01	Wine grape	cytosol	52.5	52.35
VIT_00s0371g00060.t01	Wine grape	cytosol	43.61	52.33
VIT_02s0025g03100.t01	Wine grape	cytosol	51.11	51.83
VIT_00s0615g00030.t01	Wine grape	cytosol	56.94	51.51
VIT_00s0371g00020.t01	Wine grape	cytosol	7.78	50.91
VIT_00s0174g00270.t01	Wine grape	cytosol	50.0	50.42
VIT_00s0371g00010.t01	Wine grape	cytosol	9.72	50.0
VIT_07s0129g01030.t01	Wine grape	cytosol, mitochondrion	47.5	48.58
VIT_00s0174g00210.t01	Wine grape	cytosol	17.78	48.12
VIT_02s0025g03110.t01	Wine grape	cytosol	10.28	48.05
VIT_00s0346g00090.t01	Wine grape	cytosol, peroxisome, plastid	44.72	47.63
VIT_03s0180g00260.t01	Wine grape	cytosol	44.44	44.82
VIT_03s0180g00250.t01	Wine grape	cytosol	44.44	44.82
VIT_00s0174g00280.t01	Wine grape	extracellular	43.33	43.45
VIT_00s0371g00070.t01	Wine grape	cytosol	43.33	42.74

Protein Annotations

EntrezGene:100262607	wikigene:100262607	Gene3D:3.40.50.720	Gene3D:3.90.180.10	MapMan:50.1.1	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	ProteinID:CBI19922	ProteinID:CBI19922.3	UniProt:E0CQB7	EMBL:FN595227
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	EntrezGene:LOC100262607	wikigene:LOC100262607
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR42683
PANTHER:PTHR42683:SF4	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGR:TC69420	UniParc:UPI00015C8225
ArrayExpress:VIT_18s0001g14910	EnsemblPlantsGene:VIT_18s0001g14910	EnsemblPlants:VIT_18s0001g14910.t01	unigene:Vvi.11662	RefSeq:XP_002269356	RefSeq:XP_002269356.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:12954423..12956365

Molecular Weight (calculated)

39504.7 Da

IEP (calculated)

7.299

GRAVY (calculated)

-0.161

Length

360 amino acids

Sequence
(BLAST)

001: MAQTTPNHTQ TVSGWAAHDS SGKITPYVFK RRENGPNDVT IEILYCGICH TDLHHVRNDW GITMYPVVPG HEITGVVTKV GTNVTRFKTG DRVGVGCLAA
101: SCLECEFCKS SQENYCDQIQ FTYNGIFWDG SITYGGYSRM LVADQRYVVR VPENLPMDAV APMLCAGITV YSPMKDTKML ESPGKKLGII GLGGLGHVAV
201: KFAKAFGLHV TIISTSPSKE KEAKERLGAD HFIVSTNPKQ MQAGKRSLDF ILDTVSANHS LGHYLELLKV NGTMVIVGAP EKPMELPSFP LIFGKRTVKG
301: SMTGGMNETQ EMMDVCGKHN ITCDIEVVKP DQINEALERL ANNDVRYRFV IDIAGQSPNL

Best Arabidopsis Sequence Match ( AT2G21730.1 )
(BLAST)

001: MVDQNKAFGW AANDESGVLS PFHFSRRENG ENDVTVKILF CGVCHSDLHT IKNHWGFSRY PIIPGHEIVG IATKVGKNVT KFKEGDRVGV GVIIGSCQSC
101: ESCNQDLENY CPKVVFTYNS RSSDGTSRNQ GGYSDVIVVD HRFVLSIPDG LPSDSGAPLL CAGITVYSPM KYYGMTKESG KRLGVNGLGG LGHIAVKIGK
201: AFGLRVTVIS RSSEKEREAI DRLGADSFLV TTDSQKMKEA VGTMDFIIDT VSAEHALLPL FSLLKVNGKL VALGLPEKPL DLPIFSLVLG RKMVGGSQIG
301: GMKETQEMLE FCAKHKIVSD IELIKMSDIN SAMDRLAKSD VRYRFVIDVA NSLLPESSAE ILTEQVDHGV SITSRF

Arabidopsis Description

CAD2Cinnamyl alcohol dehydrogenase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.