Factsheet for VIT_03s0180g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g02610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	VIT_03s0063g02610.t01	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0180g00260.t01	Wine grape	cytosol	88.8	88.8
PGSC0003DMT400066217	Potato	cytosol	82.07	82.07
Solyc01g107590.2.1	Tomato	cytosol, extracellular	81.79	81.79
KRH35742	Soybean	cytosol, nucleus	79.55	79.33
KRG91021	Soybean	cytosol, nucleus	78.99	78.99
Bra022425.1-P	Field mustard	cytosol	78.71	76.99
CDY46173	Canola	cytosol	78.71	76.99
CDX99222	Canola	cytosol	78.43	76.5
AT4G34230.1	Thale cress	cytosol	76.47	76.47
CDX72466	Canola	cytosol	76.19	76.19
Bra017639.1-P	Field mustard	cytosol	76.19	76.19
Bra011510.1-P	Field mustard	cytosol	76.19	76.19
CDY49288	Canola	cytosol	75.91	75.91
CDX75413	Canola	cytosol	75.63	75.63
GSMUA_Achr4P12970_001	Banana	cytosol	75.63	75.63
CDX69037	Canola	cytosol	75.63	75.63
AT3G19450.1	Thale cress	cytosol	77.03	75.34
TraesCS6B01G201600.1	Wheat	cytosol	75.35	74.72
GSMUA_Achr4P06150_001	Banana	cytosol	74.51	74.51
TraesCS6A01G173700.1	Wheat	cytosol	75.07	74.44
TraesCS6D01G162800.1	Wheat	cytosol	74.79	74.17
Os02t0187800-01	Rice	cytosol	75.35	74.1
HORVU6Hr1G035420.6	Barley	cytosol	75.07	73.63
Zm00001d015618_P001	Maize	extracellular	75.07	73.02
KXG29649	Sorghum	cytosol	74.23	72.6
VIT_07s0129g01030.t01	Wine grape	cytosol, mitochondrion	65.27	66.19
VIT_00s0371g00010.t01	Wine grape	cytosol	10.92	55.71
VIT_00s0371g00100.t01	Wine grape	cytosol	53.78	53.04
VIT_00s0346g00080.t01	Wine grape	cytosol	53.78	53.04
VIT_00s0615g00020.t01	Wine grape	cytosol	51.54	51.11
VIT_00s0371g00050.t01	Wine grape	cytosol	50.98	50.56
VIT_00s0615g00010.t01	Wine grape	cytosol	50.98	50.56
VIT_00s0346g00110.t01	Wine grape	cytosol	50.98	50.56
VIT_00s1389g00010.t01	Wine grape	cytosol	50.7	50.28
VIT_04s0044g00210.t01	Wine grape	cytosol	50.42	50.14
VIT_04s0044g00190.t01	Wine grape	cytosol	50.14	49.86
VIT_18s0122g00450.t01	Wine grape	cytosol, plastid	51.82	49.2
VIT_00s0346g00120.t01	Wine grape	cytosol	49.58	49.03
VIT_00s0346g00100.t01	Wine grape	cytosol	49.58	49.03
VIT_00s0371g00060.t01	Wine grape	cytosol	40.9	48.67
VIT_00s0218g00010.t01	Wine grape	cytosol	48.74	47.41
VIT_10s0003g04910.t01	Wine grape	cytosol	47.06	46.28
VIT_00s0371g00040.t01	Wine grape	cytosol	28.57	45.33
VIT_00s0615g00030.t01	Wine grape	cytosol	50.42	45.23
VIT_00s0174g00270.t01	Wine grape	cytosol	45.1	45.1
VIT_00s0174g00220.t01	Wine grape	golgi	22.97	44.81
VIT_18s0001g14910.t01	Wine grape	cytosol	44.82	44.44
VIT_02s0025g03100.t01	Wine grape	cytosol	43.7	43.94
VIT_00s0174g00210.t01	Wine grape	cytosol	15.69	42.11
VIT_00s0371g00020.t01	Wine grape	cytosol	6.44	41.82
VIT_00s0346g00090.t01	Wine grape	cytosol, peroxisome, plastid	39.5	41.72
VIT_18s0001g01160.t01	Wine grape	mitochondrion	17.65	39.13
VIT_00s0371g00070.t01	Wine grape	cytosol	38.94	38.08
VIT_00s0174g00280.t01	Wine grape	extracellular	37.25	37.05
VIT_02s0025g03110.t01	Wine grape	cytosol	7.28	33.77

Protein Annotations

EntrezGene:100262421	wikigene:100262421	MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C
InterPro:ADH_N	InterPro:ADH_Zn_CS	ProteinID:CBI40260	ProteinID:CBI40260.3	UniProt:D7UBZ5	EMBL:FN596754
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:GroES-like_sf	EntrezGene:LOC100262421	wikigene:LOC100262421
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR42683
PANTHER:PTHR42683:SF1	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	TIGR:TC60332	UniParc:UPI00015C90C1
ArrayExpress:VIT_03s0180g00250	EnsemblPlantsGene:VIT_03s0180g00250	EnsemblPlants:VIT_03s0180g00250.t01	unigene:Vvi.25074	RefSeq:XP_002285394	RefSeq:XP_002285394.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:6179858..6181360

Molecular Weight (calculated)

38993.5 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.038

Length

357 amino acids

Sequence
(BLAST)

001: MRSLGTEKTT IGWAARDPSG ALSPYTYTLR NTGPEDVVIK VTYCGICHSD LHLIKNHQGI SHYPMVPGHE VVGEVVEVGS DVRKFRVGDC VGVGLLVGCC
101: GICRPCKSEM EQYCNQVIWS YNHVYTDGKP TQGGFARSMI VDQKFAVKIP DGMAPEQAAP LLCAGVTAYS PLSHLGLKKS GLRGGILGLG GVGHMGVKIA
201: KAMGHHVTVI SSSDRKREEA MDHLGADDYL ISSDSTRMQK AADSLDYIID TVPVFHPLEL YLSLLKLDGK LILLGIINTP LQFANPMVML GRKSITGSFI
301: GSMKETEEVL EFCKEKGVTS MIEMVKMDYV NTAFERLEKN DVRYRFVVDV AGSKLDQ

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.