CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH29451
KRH29452
KRH29453
KRH29454
KRH51528
KRH60842

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	KRH29451	AT2G21660.1	21798944
AT4G34230.1	KRH29452	AT2G21660.1	21798944
AT4G34230.1	KRH29453	AT2G21660.1	21798944
AT4G34230.1	KRH29454	AT2G21660.1	21798944
AT4G34230.1	KRH51528	AT2G21660.1	21798944
AT4G34230.1	KRH60842	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35742	Soybean	cytosol, nucleus	98.6	98.32
VIT_03s0180g00260.t01	Wine grape	cytosol	83.75	83.75
PGSC0003DMT400066217	Potato	cytosol	83.19	83.19
Solyc01g107590.2.1	Tomato	cytosol, extracellular	82.91	82.91
VIT_03s0180g00250.t01	Wine grape	cytosol	78.99	78.99
AT4G34230.1	Thale cress	cytosol	78.71	78.71
Bra017639.1-P	Field mustard	cytosol	78.71	78.71
CDX72466	Canola	cytosol	78.71	78.71
CDY49288	Canola	cytosol	78.43	78.43
CDX75413	Canola	cytosol	77.87	77.87
Bra011510.1-P	Field mustard	cytosol	77.59	77.59
CDX69037	Canola	cytosol	76.75	76.75
AT3G19450.1	Thale cress	cytosol	77.87	76.16
CDY46173	Canola	cytosol	77.31	75.62
Bra022425.1-P	Field mustard	cytosol	77.31	75.62
CDX99222	Canola	cytosol	77.03	75.14
GSMUA_Achr4P12970_001	Banana	cytosol	74.79	74.79
TraesCS6B01G201600.1	Wheat	cytosol	74.79	74.17
TraesCS6A01G173700.1	Wheat	cytosol	74.51	73.89
TraesCS6D01G162800.1	Wheat	cytosol	74.23	73.61
HORVU6Hr1G035420.6	Barley	cytosol	74.51	73.08
GSMUA_Achr4P06150_001	Banana	cytosol	72.55	72.55
Zm00001d015618_P001	Maize	extracellular	74.23	72.21
KXG29649	Sorghum	cytosol	73.67	72.05
Os02t0187800-01	Rice	cytosol	73.11	71.9
KRG99878	Soybean	cytosol	53.22	52.63
KRH74457	Soybean	cytosol	51.54	51.25
KRH43378	Soybean	cytosol	49.86	50.0
KRH39488	Soybean	cytosol	50.7	49.73
KRH59514	Soybean	cytosol	50.14	49.72
KRH74456	Soybean	cytosol	49.86	49.17
KRH39487	Soybean	cytosol	41.46	47.74
KRH17471	Soybean	cytosol	48.18	47.65
KRH07586	Soybean	cytosol	38.38	47.4
KRH45510	Soybean	cytosol	38.94	46.96
KRH05985	Soybean	cytosol	47.06	46.41
KRH49728	Soybean	cytosol	27.45	44.75
KRH10632	Soybean	cytosol	43.42	43.42
KRH45514	Soybean	cytosol	31.65	42.97
KRH45566	Soybean	cytosol	36.41	42.62
KRH21722	Soybean	cytosol	42.3	42.3

Protein Annotations

EntrezGene:100804892	MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	UniProt:A0A0R0EAL6	EMBL:ACUP02012660
InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS	EnsemblPlantsGene:GLYMA_20G128600	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0016491	GO:GO:0046872
GO:GO:0055114	InterPro:GroES-like_sf	EnsemblPlants:KRG91021	ProteinID:KRG91021	ProteinID:KRG91021.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER	ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF1
SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735	UniParc:UPI00018C6E65	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:37014285..37016277

Molecular Weight (calculated)

39032.4 Da

IEP (calculated)

5.601

GRAVY (calculated)

-0.013

Length

357 amino acids

Sequence
(BLAST)

001: MGSLEAERTT VGLAARDPSG ILSPYTYNLR NTGPDDVYIK VHYCGICHSD LHQIKNDLGM SNYPMVPGHE VVGEVLEVGS DVSRFRVGEL VGVGLLVGCC
101: KNCQPCQQDI ENYCSKKIWS YNDVYVDGKP TQGGFAETMV VEQKFVVKIP EGLAPEQVAP LLCAGVTVYS PLVHFGLKES GLRGGILGLG GVGHMGVKIA
201: KALGHHVTVI SSSDKKKQEA LEHLGADQYL VSSDVTAMQE AADSLDYIID TVPVGHPLEP YLSLLKLDGK LILMGVINTP LQFVSPMVML GRRSITGSFI
301: GSMKETEEML EFWKEKGLSS MIEVVNMDYI NKAFERLEKN DVRYRFVVDV KGSKLVD

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.