Factsheet for GSMUA_Achr4P12970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P30570_001
GSMUA_Achr4P14550_001
GSMUA_Achr7P27650_001
GSMUA_Achr8P05200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34230.1	GSMUA_Achr3P30570_001	AT2G21660.1	21798944
AT4G34230.1	GSMUA_Achr4P14550_001	AT2G21660.1	21798944
AT4G34230.1	GSMUA_Achr7P27650_001	AT2G21660.1	21798944
AT4G34230.1	GSMUA_Achr8P05200_001	AT2G21660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06150_001	Banana	cytosol	84.87	84.87
VIT_03s0180g00260.t01	Wine grape	cytosol	78.99	78.99
Os02t0187800-01	Rice	cytosol	79.83	78.51
TraesCS6D01G162800.1	Wheat	cytosol	78.99	78.33
TraesCS6A01G173700.1	Wheat	cytosol	78.99	78.33
TraesCS6B01G201600.1	Wheat	cytosol	78.71	78.06
HORVU6Hr1G035420.6	Barley	cytosol	78.99	77.47
Zm00001d015618_P001	Maize	extracellular	78.71	76.57
Solyc01g107590.2.1	Tomato	cytosol, extracellular	76.19	76.19
PGSC0003DMT400066217	Potato	cytosol	75.91	75.91
KXG29649	Sorghum	cytosol	77.59	75.89
VIT_03s0180g00250.t01	Wine grape	cytosol	75.63	75.63
KRG91021	Soybean	cytosol, nucleus	74.79	74.79
KRH35742	Soybean	cytosol, nucleus	74.51	74.3
AT4G34230.1	Thale cress	cytosol	74.23	74.23
Bra017639.1-P	Field mustard	cytosol	72.83	72.83
CDX72466	Canola	cytosol	72.83	72.83
CDY49288	Canola	cytosol	72.55	72.55
Bra022425.1-P	Field mustard	cytosol	73.95	72.33
CDY46173	Canola	cytosol	73.95	72.33
CDX69037	Canola	cytosol	72.27	72.27
CDX99222	Canola	cytosol	73.95	72.13
Bra011510.1-P	Field mustard	cytosol	71.99	71.99
CDX75413	Canola	cytosol	71.99	71.99
AT3G19450.1	Thale cress	cytosol	72.83	71.23
GSMUA_Achr9P27270_001	Banana	cytosol	52.1	52.39
GSMUA_Achr7P07160_001	Banana	cytosol	52.1	51.96
GSMUA_Achr5P11490_001	Banana	cytosol	49.02	48.88
GSMUA_Achr9P30860_001	Banana	cytosol	48.46	46.38
GSMUA_Achr4P26450_001	Banana	cytosol	46.5	46.37
GSMUA_AchrUn_...	Banana	cytosol	46.78	46.13
GSMUA_Achr10P...	Banana	cytosol	45.94	45.94
GSMUA_Achr1P00850_001	Banana	cytosol	44.54	44.54

Protein Annotations

MapMan:21.6.1.8	Gene3D:3.40.50.720	Gene3D:3.90.180.10	InterPro:ADH_C	InterPro:ADH_N	InterPro:ADH_Zn_CS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G12970_001	EnsemblPlants:GSMUA_Achr4P12970_001	EnsemblPlants:GSMUA_Achr4T12970_001
InterPro:GroES-like_sf	UniProt:M0SNG2	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00107	PFAM:PF08240	InterPro:PKS_ER
ScanProsite:PS00059	PANTHER:PTHR42683	PANTHER:PTHR42683:SF1	SMART:SM00829	SUPFAM:SSF50129	SUPFAM:SSF51735
UniParc:UPI0002952DB1	SEG:seg	:	:	:	:

Description

Probable cinnamyl alcohol dehydrogenase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12970_001]

Coordinates

chr4:-:9656057..9658783

Molecular Weight (calculated)

38466.7 Da

IEP (calculated)

6.345

GRAVY (calculated)

0.060

Length

357 amino acids

Sequence
(BLAST)

001: MGSLKTEKTV TGWAARDSSG ILSPYSYTLR KTGPEDVVIK VLFCGVCHTD LHQTKNDLGM SKYPMVPGHE VVGEVVEVGA EVSKFEVADT VGAGVIVGCC
101: RECAPCKADT EQYCSRKIWS YNDVYTDGKP TQGGFASAMV VDQKFLVKIP PGLAPEQAAP LLCAGLTVYS PMKHFGLMET GLSAGVLGLG GVGHMGVKFA
201: KAMGHHVTVI SSSDKKRAEA VHHLGADSYL VSSDEAGMAA AADTLDYIID TVPAFHPLEP YLSLLKLNGK LILLGVINQP LQFLTPMVML GRKSITGSFI
301: GSMQETREML EFCEAKGVTS MIEVVKMDYA NEAFKRLERN DVRYRFVIDV AGSNLDP

Best Arabidopsis Sequence Match ( AT3G19450.1 )
(BLAST)

001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN

Arabidopsis Description

CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.