Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G002150.1 | |
| HORVU5Hr1G089190.1 | |
| HORVU6Hr1G055440.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34230.1 | HORVU5Hr1G002150.1 | AT2G21660.1 | 21798944 |
| AT4G34230.1 | HORVU5Hr1G089190.1 | AT2G21660.1 | 21798944 |
| AT4G34230.1 | HORVU6Hr1G055440.1 | AT2G21660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G201600.1 | Wheat | cytosol | 95.88 | 96.94 |
| TraesCS6A01G173700.1 | Wheat | cytosol | 95.88 | 96.94 |
| TraesCS6D01G162800.1 | Wheat | cytosol | 95.05 | 96.11 |
| Zm00001d015618_P001 | Maize | extracellular | 89.01 | 88.28 |
| Os02t0187800-01 | Rice | cytosol | 87.91 | 88.15 |
| KXG29649 | Sorghum | cytosol | 87.36 | 87.12 |
| VIT_03s0180g00260.t01 | Wine grape | cytosol | 78.02 | 79.55 |
| GSMUA_Achr4P06150_001 | Banana | cytosol | 78.02 | 79.55 |
| GSMUA_Achr4P12970_001 | Banana | cytosol | 77.47 | 78.99 |
| Solyc01g107590.2.1 | Tomato | cytosol, extracellular | 76.65 | 78.15 |
| PGSC0003DMT400066217 | Potato | cytosol | 76.37 | 77.87 |
| VIT_03s0180g00250.t01 | Wine grape | cytosol | 73.63 | 75.07 |
| AT4G34230.1 | Thale cress | cytosol | 73.35 | 74.79 |
| Bra017639.1-P | Field mustard | cytosol | 73.35 | 74.79 |
| CDX69037 | Canola | cytosol | 73.35 | 74.79 |
| CDX72466 | Canola | cytosol | 73.35 | 74.79 |
| Bra011510.1-P | Field mustard | cytosol | 73.08 | 74.51 |
| KRG91021 | Soybean | cytosol, nucleus | 73.08 | 74.51 |
| CDY49288 | Canola | cytosol | 73.08 | 74.51 |
| KRH35742 | Soybean | cytosol, nucleus | 73.08 | 74.3 |
| Bra022425.1-P | Field mustard | cytosol | 74.45 | 74.25 |
| CDY46173 | Canola | cytosol | 74.45 | 74.25 |
| CDX75413 | Canola | cytosol | 72.8 | 74.23 |
| HORVU6Hr1G035410.1 | Barley | cytosol | 12.64 | 74.19 |
| CDX99222 | Canola | cytosol | 74.18 | 73.77 |
| AT3G19450.1 | Thale cress | cytosol | 73.35 | 73.15 |
| HORVU6Hr1G032760.3 | Barley | cytosol | 41.21 | 50.17 |
| HORVU2Hr1G010840.1 | Barley | peroxisome | 47.25 | 48.04 |
| HORVU5Hr1G062030.9 | Barley | cytosol | 50.0 | 47.27 |
| HORVU6Hr1G087220.1 | Barley | cytosol | 46.7 | 46.32 |
| HORVU7Hr1G079380.2 | Barley | cytosol | 47.25 | 46.24 |
| HORVU1Hr1G007800.1 | Barley | cytosol | 45.33 | 44.84 |
| HORVU3Hr1G097140.1 | Barley | cytosol | 43.41 | 44.38 |
| HORVU3Hr1G097160.1 | Barley | cytosol | 41.48 | 42.66 |
| HORVU0Hr1G012860.2 | Barley | plastid | 47.8 | 41.33 |
| HORVU2Hr1G010830.1 | Barley | peroxisome | 47.25 | 40.09 |
| HORVU3Hr1G097060.1 | Barley | cytosol, plastid | 15.38 | 36.6 |
| HORVU0Hr1G012940.6 | Barley | cytosol | 39.01 | 36.04 |
| HORVU2Hr1G099360.1 | Barley | cytosol | 6.87 | 34.25 |
| HORVU2Hr1G099350.2 | Barley | cytosol, mitochondrion | 17.86 | 16.17 |
Protein Annotations
| MapMan:21.6.1.8 | Gene3D:3.40.50.720 | Gene3D:3.90.180.10 | UniProt:A0A287TX15 | InterPro:ADH_C | InterPro:ADH_N |
| InterPro:ADH_Zn_CS | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009809 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0019748 |
| GO:GO:0045551 | GO:GO:0046872 | GO:GO:0055114 | InterPro:GroES-like_sf | EnsemblPlantsGene:HORVU6Hr1G035420 | EnsemblPlants:HORVU6Hr1G035420.6 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF00107 | PFAM:PF08240 | InterPro:PKS_ER | ScanProsite:PS00059 | PANTHER:PTHR42683 |
| PANTHER:PTHR42683:SF1 | SMART:SM00829 | SUPFAM:SSF50129 | SUPFAM:SSF51735 | UniParc:UPI000B464F20 | SEG:seg |
Description
No Description!
Coordinates
chrchr6H:+:170800828..170804655
Molecular Weight (calculated)
39081.3 Da
IEP (calculated)
5.837
GRAVY (calculated)
0.063
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVDASETT VTGWAARDAT GHLSPYTYTL RKTGPEDVVL KVKYCGICHT DIHQVKNDLG ASKYPMVPGH EVVGEVVEVG PEVSKYRVGD VVGVGVIVGC
101: CRDCRPCKAN VEQYCNKKIW SYNDVYTDGR PTQGGFASAM VVDQKFVVKI PAGLAPEQAA PLLCAGVTVY SPLKHFGLMT PGLRGGILGL GGVGHMGVKV
201: AKSMGHHVTV ISSSNKKRAE AVDDLGADEY LVSSDADQMA AAADSLDYII DTVPVKHPLE PYLALLKMDG KLVLMGVIAE PLSFVSPMVM LGRKTITGSF
301: IGSMDETEEV LKFCVDKGLT SQIEVVKMDY VNQALERLER NDVRYRFVVD VAGSNLEDVA CACL
101: CRDCRPCKAN VEQYCNKKIW SYNDVYTDGR PTQGGFASAM VVDQKFVVKI PAGLAPEQAA PLLCAGVTVY SPLKHFGLMT PGLRGGILGL GGVGHMGVKV
201: AKSMGHHVTV ISSSNKKRAE AVDDLGADEY LVSSDADQMA AAADSLDYII DTVPVKHPLE PYLALLKMDG KLVLMGVIAE PLSFVSPMVM LGRKTITGSF
301: IGSMDETEEV LKFCVDKGLT SQIEVVKMDY VNQALERLER NDVRYRFVVD VAGSNLEDVA CACL
001: MGSVEAGEKK ALGWAARDPS GVLSPYSYTL RSTGADDVYI KVICCGICHT DIHQIKNDLG MSNYPMVPGH EVVGEVLEVG SDVSKFTVGD VVGVGVVVGC
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN
101: CGSCKPCSSE LEQYCNKRIW SYNDVYTDGK PTQGGFADTM IVNQKFVVKI PEGMAVEQAA PLLCAGVTVY SPLSHFGLMA SGLKGGILGL GGVGHMGVKI
201: AKAMGHHVTV ISSSDKKKEE AIEHLGADDY VVSSDPAEMQ RLADSLDYII DTVPVFHPLD PYLACLKLDG KLILMGVINT PLQFVTPLVI LGRKVISGSF
301: IGSIKETEEV LAFCKEKGLT STIETVKIDE LNIAFERLRK NDVRYRFVVD VAGSNLVEEA ATTTN
Arabidopsis Description
CAD4Cinnamyl alcohol dehydrogenase 4 [Source:UniProtKB/Swiss-Prot;Acc:P48523]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.