Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46213 | Canola | nucleus | 46.46 | 37.7 |
| CDY41969 | Canola | cytosol | 46.46 | 35.94 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 46.46 | 34.59 |
| Solyc10g051390.1.1 | Tomato | nucleus | 40.4 | 33.9 |
| Solyc10g051380.1.1 | Tomato | nucleus | 43.43 | 33.08 |
| KRH29453 | Soybean | nucleus | 45.45 | 32.14 |
| Zm00001d041246_P001 | Maize | nucleus | 46.46 | 31.72 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 49.49 | 31.61 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 51.52 | 31.48 |
| KRH29452 | Soybean | nucleus | 48.48 | 30.77 |
| Bra030284.1-P | Field mustard | nucleus | 49.49 | 29.17 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 46.46 | 29.11 |
| Zm00001d031168_P001 | Maize | plastid | 45.45 | 29.03 |
| CDY15876 | Canola | nucleus | 49.49 | 28.99 |
| Bra011869.1-P | Field mustard | cytosol | 46.46 | 28.4 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 45.45 | 28.3 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 48.48 | 28.24 |
| CDY72366 | Canola | nucleus | 48.48 | 28.07 |
| KRH29451 | Soybean | nucleus | 48.48 | 28.07 |
| Bra001972.1-P | Field mustard | nucleus | 46.46 | 28.05 |
| CDY42616 | Canola | cytosol | 44.44 | 28.03 |
| CDY12133 | Canola | cytosol | 44.44 | 27.85 |
| CDY70933 | Canola | nucleus | 46.46 | 27.38 |
| Bra031210.1-P | Field mustard | nucleus | 46.46 | 27.38 |
| EES16438 | Sorghum | nucleus | 45.45 | 27.27 |
| CDX90323 | Canola | plastid | 45.45 | 27.27 |
| Bra010693.1-P | Field mustard | nucleus | 45.45 | 27.27 |
| CDY59763 | Canola | nucleus | 45.45 | 26.95 |
| KXG37870 | Sorghum | nucleus | 45.45 | 26.47 |
| CDX71276 | Canola | nucleus | 45.45 | 26.16 |
| AT2G21660.1 | Thale cress | nucleus | 46.46 | 26.14 |
| PGSC0003DMT400084266 | Potato | extracellular | 42.42 | 26.09 |
| PGSC0003DMT400084290 | Potato | nucleus | 43.43 | 25.9 |
| PGSC0003DMT400084258 | Potato | nucleus | 43.43 | 25.9 |
| PGSC0003DMT400083014 | Potato | nucleus | 43.43 | 25.9 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 44.44 | 25.43 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 41.41 | 25.31 |
| KRH29454 | Soybean | nucleus | 43.43 | 25.29 |
| KRH51528 | Soybean | nucleus | 46.46 | 25.27 |
| Solyc01g109660.2.1 | Tomato | extracellular | 44.44 | 25.14 |
| PGSC0003DMT400001879 | Potato | cytosol | 44.44 | 25.0 |
| KRH60842 | Soybean | mitochondrion | 46.46 | 24.86 |
| AT4G39260.1 | Thale cress | nucleus | 41.41 | 24.26 |
| Os03t0670700-01 | Rice | nucleus | 47.47 | 23.98 |
| HORVU3Hr1G093400.1 | Barley | plastid | 39.39 | 23.21 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 27.27 | 22.13 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 30.3 | 22.06 |
| HORVU4Hr1G059000.4 | Barley | plastid | 35.35 | 18.13 |
| HORVU2Hr1G042560.2 | Barley | mitochondrion | 26.26 | 15.66 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 34.34 | 14.78 |
| HORVU3Hr1G094330.2 | Barley | mitochondrion | 38.38 | 12.42 |
| HORVU5Hr1G110370.1 | Barley | mitochondrion | 36.36 | 12.29 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 36.36 | 11.54 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G089190.1 | EnsemblPlantsGene:HORVU5Hr1G089190 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44993 | PANTHER:PTHR44993:SF1 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B472587 | UniProt:A0A287S749 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:584465119..584466243
Molecular Weight (calculated)
10856.9 Da
IEP (calculated)
4.867
GRAVY (calculated)
-0.261
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MALSEVGYRI LVIGLYGSTD EASLETAFAP FGEMIECKIM RDRETGLSRL FGIVTYSSED SMRHAIQSMN EGLVDGAKVT VLEAKAPSHR SGRNGNERE
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.