Factsheet for HORVU1Hr1G075150.4

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G045920.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	HORVU5Hr1G045920.2	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G268600.1	Wheat	golgi	79.82	86.89
TraesCS1A01G268500.1	Wheat	cytosol	78.92	85.9
TraesCS1B01G279200.1	Wheat	cytosol	78.61	85.57
HORVU3Hr1G082150.1	Barley	cytosol	43.67	84.3
Zm00001d005249_P001	Maize	mitochondrion	34.19	81.95
Zm00001d041705_P001	Maize	cytosol, mitochondrion	13.1	81.31
Zm00001d005304_P001	Maize	mitochondrion	33.28	81.25
Zm00001d043169_P001	Maize	cytosol	25.6	80.57
Os05t0429400-01	Rice	plasma membrane	67.92	77.09
Zm00001d038262_P001	Maize	plasma membrane	65.96	70.65
OQU78068	Sorghum	cytosol	54.82	69.2
VIT_09s0002g09040.t01	Wine grape	cytosol	11.14	64.91
HORVU3Hr1G082110.2	Barley	plastid	62.65	64.5
Zm00001d010205_P002	Maize	cytosol	52.26	64.38
GSMUA_Achr7P23220_001	Banana	cytosol	47.74	63.4
KRG99105	Soybean	cytosol	13.25	59.46
Bra000675.1-P	Field mustard	cytosol	27.41	58.71
CDX90715	Canola	cytosol	26.96	57.74
GSMUA_Achr6P18780_001	Banana	cytosol	50.3	57.59
GSMUA_Achr3P22170_001	Banana	cytosol	44.88	56.65
GSMUA_Achr5P25970_001	Banana	cytosol	47.29	56.58
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	34.04	53.3
VIT_07s0031g03220.t01	Wine grape	cytosol	41.27	52.49
CDY58916	Canola	cytosol	10.69	51.45
PGSC0003DMT400065886	Potato	cytosol	37.2	50.31
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	37.05	50.2
VIT_18s0041g00430.t01	Wine grape	cytosol	45.78	50.16
KRH63933	Soybean	plasma membrane	41.42	49.37
KRH54012	Soybean	nucleus	41.42	49.37
KRH59683	Soybean	cytosol	39.76	48.98
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	46.08	48.96
CDY50441	Canola	plasma membrane	35.24	48.25
CDY03654	Canola	nucleus	35.24	47.85
CDX82180	Canola	nucleus	35.24	47.85
Bra003891.1-P	Field mustard	cytosol	36.14	47.62
CDX68278	Canola	cytosol	31.33	47.38
Bra008013.1-P	Field mustard	nucleus	35.39	47.38
AT1G72160.1	Thale cress	nucleus	34.94	47.35
PGSC0003DMT400013297	Potato	cytosol	41.11	47.31
VIT_05s0029g01570.t01	Wine grape	cytosol	28.61	47.26
KRH41016	Soybean	endoplasmic reticulum	40.66	46.96
Solyc06g064940.2.1	Tomato	nucleus	40.96	46.9
KRH44929	Soybean	endoplasmic reticulum	39.91	46.01
Solyc11g051160.1.1	Tomato	extracellular, plastid	40.36	45.5
KRH23751	Soybean	endoplasmic reticulum	40.66	44.55
VIT_18s0041g00420.t01	Wine grape	cytosol	39.01	44.5
CDX96377	Canola	cytosol	35.24	42.09
Bra016084.1-P	Field mustard	cytosol	35.24	41.94
CDY03655	Canola	cytosol	35.54	41.77
Bra008012.1-P	Field mustard	cytosol	35.24	41.64
CDX68279	Canola	cytosol	33.28	41.62
CDY71835	Canola	cytosol	17.47	40.56
Bra003892.1-P	Field mustard	cytosol	31.63	40.23
AT1G72150.1	Thale cress	cytosol	34.64	40.14
CDX82182	Canola	cytosol	34.49	39.83
CDY71842	Canola	cytosol	28.46	39.29
HORVU7Hr1G107070.1	Barley	cytosol	31.33	38.45
AT1G22530.1	Thale cress	cytosol	37.2	36.16
Bra040854.1-P	Field mustard	cytosol	37.35	35.13
CDY21368	Canola	cytosol	34.19	34.82
CDY66581	Canola	cytosol	32.53	34.5
AT4G09160.1	Thale cress	cytosol	33.58	33.38
CDY05051	Canola	nucleus	33.73	32.28
HORVU1Hr1G051510.3	Barley	plastid	14.01	19.87

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A287G9P1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:HORVU1Hr1G075150	EnsemblPlants:HORVU1Hr1G075150.4
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000B479F4E	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr1H:+:509976593..509979975

Molecular Weight (calculated)

71979.1 Da

IEP (calculated)

4.433

GRAVY (calculated)

-0.323

Length

664 amino acids

Sequence
(BLAST)

001: LCWRMPPAKQ TPRPVEAELV VVLFSSTSAP SLHLSTNLSP PSHSLSTILP LLHALLVSTG LHARARFDPV PASSMAEGAK QEAAAVAQVV APEADSKVVE
101: EKAVEVVEEK ADEVAAAAAE EEEEEEKKME EAEAEAEAGA VIEGTTASFK EESNLVADLA DPEQKALAQL KELVAAALAS GEFDLPPPPP PPAPAAEEPA
201: KEEEAAAAKS DVAAEVGEAP KTEVAAASEP KAEEPAKEEP KTEAPAQEEP KAEEPAKVEP KAEEAPPAAV AVVEEPKAEA PAAVAAAEEP KPEVVAEEAG
301: AKTVEAIEET VVPAAPEPKE ELIWGVPLVG GDERTDTVLL KFLRAREFKV KEAMAMLKAA VLWRKSFGID ALLDADLGVP ELENVVFYRG ADREGHPVCY
401: NVYSEFQDKD LYEKAFGDDE KRERFLKWRI QLLERGIREQ LDFSPSGICS MVQVTDLKNS PPMLGKHRAV TRQALALLQD NYPEFIAKKV FINVPWWYLA
501: ANKVMSPFLT QRTKSKFTFC GPAKTAETLF RYIAPEQVPV QFGGLFKEDD TEFSTSDGVT ELTVKPSSKE TIEIPATENS TVVWELRVLG WEVSYGVEFT
601: PDAEGGYTVI VQKTRKVPAN EEPIMKGSFK ASEPGKVLLT VNNPTSKKKK LLCRFKVKSS TESA

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.