Factsheet for Bra016084.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96377	Canola	cytosol	98.39	98.74
CDY71842	Canola	cytosol	80.65	93.56
Bra008012.1-P	Field mustard	cytosol	88.17	87.54
Bra003892.1-P	Field mustard	cytosol	79.57	85.06
AT1G72150.1	Thale cress	cytosol	84.05	81.85
GSMUA_Achr2P08100_001	Banana	cytosol	39.07	54.91
Bra040854.1-P	Field mustard	cytosol	69.18	54.67
Zm00001d041705_P001	Maize	cytosol, mitochondrion	9.68	50.47
HORVU3Hr1G082150.1	Barley	cytosol	31.0	50.29
KRG99105	Soybean	cytosol	13.26	50.0
GSMUA_Achr7P23220_001	Banana	cytosol	43.37	48.4
Bra000675.1-P	Field mustard	cytosol	26.88	48.39
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	39.07	47.81
Solyc11g051160.1.1	Tomato	extracellular, plastid	49.1	46.52
Zm00001d005304_P001	Maize	mitochondrion	22.58	46.32
Zm00001d005249_P001	Maize	mitochondrion	22.94	46.21
Solyc06g064940.2.1	Tomato	nucleus	47.67	45.86
PGSC0003DMT400013297	Potato	cytosol	47.13	45.58
VIT_18s0041g00430.t01	Wine grape	cytosol	49.1	45.21
GSMUA_Achr6P18780_001	Banana	cytosol	46.42	44.66
Zm00001d012254_P003	Maize	mitochondrion	43.73	43.88
KRH44929	Soybean	endoplasmic reticulum	45.16	43.75
KRH23751	Soybean	endoplasmic reticulum	47.31	43.56
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	40.32	43.27
GSMUA_Achr5P25970_001	Banana	cytosol	42.65	42.88
Bra008013.1-P	Field mustard	nucleus	37.99	42.74
Zm00001d043169_P001	Maize	cytosol	16.13	42.65
GSMUA_Achr3P22170_001	Banana	cytosol	39.78	42.21
Bra003891.1-P	Field mustard	cytosol	37.81	41.87
KXG33790	Sorghum	cytosol	44.27	41.86
Os05t0429400-01	Rice	plasma membrane	43.55	41.54
Zm00001d042664_P001	Maize	plasma membrane	42.47	41.51
EES10230	Sorghum	cytosol	37.99	41.41
TraesCS3B01G417500.1	Wheat	golgi	42.83	41.35
TraesCS3A01G385300.1	Wheat	cytosol	42.65	41.18
Os01t0874700-01	Rice	plasma membrane	44.62	40.62
TraesCS3D01G378300.1	Wheat	cytosol	42.65	40.55
Zm00001d038262_P001	Maize	plasma membrane	43.37	39.03
OQU78068	Sorghum	cytosol	36.74	38.97
TraesCS1B01G279200.1	Wheat	cytosol	42.29	38.69
TraesCS1D01G268600.1	Wheat	golgi	41.94	38.36
TraesCS1A01G268500.1	Wheat	cytosol	41.58	38.03
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	42.29	37.76
Zm00001d010205_P002	Maize	cytosol	36.2	37.48
Bra036782.1-P	Field mustard	cytosol, plastid	27.24	36.89
HORVU3Hr1G082110.2	Barley	plastid	42.29	36.59
HORVU1Hr1G075150.4	Barley	plasma membrane	41.94	35.24
Bra026229.1-P	Field mustard	cytosol	32.62	34.21
Bra023118.1-P	Field mustard	cytosol	29.57	33.6
Bra012843.1-P	Field mustard	cytosol	25.09	31.67

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	EnsemblPlantsGene:Bra016084	EnsemblPlants:Bra016084.1	EnsemblPlants:Bra016084.1-P	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:GOLD_dom	InterPro:GOLD_dom_sf
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:M4DHV7	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002541BC9	SEG:seg	:

Description

AT1G72150 (E=2e-180) PATL1 | PATL1 (PATELLIN 1); transporter

Coordinates

chrA07:+:19505488..19507549

Molecular Weight (calculated)

62305.4 Da

IEP (calculated)

4.523

GRAVY (calculated)

-0.589

Length

558 amino acids

Sequence
(BLAST)

001: MAQEEAQKSA DVVVVSAEKP MTDDKEVTVP APVPEKEVTP PVASEEKVAA EAEAEKSAPV KEEETVVAEK VVVPTPEELE KKALEEFKEL VREALNKREF
101: TAPPPPPVKE EKAEEKKPAE ESKEEDKTDE KKEEEKQEEA VKTEEKPSEP AAAPAETKPE EKEAVPVTTE KATGAEEDGT KTVEAIEESI VSVTPQESAA
201: APEETTVVAE AEPVEPEEVS IYGVPLLQDE RSDVILLKFL RARDFKAKEA LTMLKNTVQW RKENKIDELI EAEAGEEASE FEKMVFAHGV DKEGHVVIYS
301: SYGEFQNKEL FSDKEKLNKF LNWRIQLQEK CVRALDFSSP DAKSSFVFVS DFRNAPGLGK RALWQFIRRA VKQFEDNYPE FATRELFINV PWWYIPYYKT
401: FGSIITSPKT RSKMVLAGPS KSADTIFKYI SPEQVPVKYG GLSKDIPLTN GDTVTEAIVK PAAKYTIELP ASEACTLSWE LRVLGADVSY GAQFEPTTEG
501: SYVVIVSKNR KIGLTDEPVI TDSFKVGEPG KIVITIDNQT SKKKKVLYRF KTQPKSDI

Best Arabidopsis Sequence Match ( AT1G72150.1 )
(BLAST)

001: MAQEEVQKSA DVAAAPVVKE KPITDKEVTI PTPVAEKEEV AAPVSDEKAV PEKEVTPEKE APAAEAEKSV SVKEEETVVV AEKVVVLTAE EVQKKALEEF
101: KELVREALNK REFTAPVTPV KEEKTEEKKT EEETKEEEKT EEKKEETTTE VKVEEEKPAV PAAEEEKSSE AAPVETKSEE KPEEKAEVTT EKASSAEEDG
201: TKTVEAIEES IVSVSPPESA VAPVVVETVA VAEAEPVEPE EVSIWGVPLL QDERSDVILT KFLRARDFKV KEALTMLKNT VQWRKENKID ELVESGEEVS
301: EFEKMVFAHG VDKEGHVVIY SSYGEFQNKE LFSDKEKLNK FLSWRIQLQE KCVRAIDFSN PEAKSSFVFV SDFRNAPGLG KRALWQFIRR AVKQFEDNYP
401: EFAAKELFIN VPWWYIPYYK TFGSIITSPR TRSKMVLAGP SKSADTIFKY IAPEQVPVKY GGLSKDTPLT EETITEAIVK PAANYTIELP ASEACTLSWE
501: LRVLGADVSY GAQFEPTTEG SYAVIVSKTR KIGSTDEPVI TDSFKVGEPG KIVITIDNQT SKKKKVLYRF KTQ

Arabidopsis Description

PATL1Patellin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.