Factsheet for TraesCS3B01G417500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4D01G122000.1
TraesCS5A01G144000.1
TraesCS5B01G143100.1
TraesCS5D01G148000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS5D01G148000.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G082150.1	Barley	cytosol	58.48	98.26
TraesCS3A01G385300.1	Wheat	cytosol	96.71	96.71
TraesCS3D01G378300.1	Wheat	cytosol	96.71	95.23
HORVU3Hr1G082110.2	Barley	plastid	94.81	84.96
Os01t0874700-01	Rice	plasma membrane	84.43	79.61
KXG33790	Sorghum	cytosol	79.76	78.14
Zm00001d012254_P003	Maize	mitochondrion	74.74	77.7
Zm00001d042664_P001	Maize	plasma membrane	75.43	76.36
EES10230	Sorghum	cytosol	65.57	74.02
TraesCS1B01G279200.1	Wheat	cytosol	71.97	68.2
GSMUA_Achr7P23220_001	Banana	cytosol	56.57	65.4
VIT_09s0002g09040.t01	Wine grape	cytosol	12.8	64.91
KRG99105	Soybean	cytosol	15.57	60.81
GSMUA_Achr6P18780_001	Banana	cytosol	59.52	59.31
GSMUA_Achr3P22170_001	Banana	cytosol	53.46	58.75
Bra000675.1-P	Field mustard	cytosol	30.8	57.42
GSMUA_Achr5P25970_001	Banana	cytosol	55.02	57.3
CDX90715	Canola	cytosol	30.1	56.13
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	39.79	54.25
KRH54012	Soybean	nucleus	49.65	51.53
KRH63933	Soybean	plasma membrane	49.31	51.17
VIT_07s0031g03220.t01	Wine grape	cytosol	45.16	50.0
KRH59683	Soybean	cytosol	45.85	49.17
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	53.11	49.12
VIT_18s0041g00430.t01	Wine grape	cytosol	51.38	49.01
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	41.52	48.98
PGSC0003DMT400065886	Potato	cytosol	41.52	48.88
CDY58916	Canola	cytosol	11.59	48.55
CDY50441	Canola	plasma membrane	39.79	47.42
KRH23751	Soybean	endoplasmic reticulum	49.65	47.36
KRH44929	Soybean	endoplasmic reticulum	47.06	47.22
AT1G72160.1	Thale cress	nucleus	39.97	47.14
CDX82180	Canola	nucleus	39.79	47.03
CDY03654	Canola	nucleus	39.79	47.03
VIT_05s0029g01570.t01	Wine grape	cytosol	32.7	47.01
Bra008013.1-P	Field mustard	nucleus	40.31	46.98
Solyc06g064940.2.1	Tomato	nucleus	46.54	46.38
PGSC0003DMT400013297	Potato	cytosol	46.19	46.27
KRH41016	Soybean	endoplasmic reticulum	46.02	46.26
Bra003891.1-P	Field mustard	cytosol	40.31	46.23
VIT_18s0041g00420.t01	Wine grape	cytosol	45.85	45.53
Solyc11g051160.1.1	Tomato	extracellular, plastid	46.19	45.33
CDX68278	Canola	cytosol	34.08	44.87
Bra008012.1-P	Field mustard	cytosol	42.04	43.24
CDY03655	Canola	cytosol	42.21	43.19
CDY71835	Canola	cytosol	21.28	43.01
Bra016084.1-P	Field mustard	cytosol	41.35	42.83
CDX96377	Canola	cytosol	41.18	42.81
CDX68279	Canola	cytosol	39.1	42.56
TraesCS1B01G213900.1	Wheat	plastid	31.14	42.55
CDX82182	Canola	cytosol	41.18	41.39
AT1G72150.1	Thale cress	cytosol	40.66	41.01
Bra003892.1-P	Field mustard	cytosol	37.02	41.0
CDY71842	Canola	cytosol	33.56	40.33
TraesCS7B01G368100.1	Wheat	nucleus	36.51	37.28
AT1G22530.1	Thale cress	cytosol	43.25	36.6
CDY21368	Canola	cytosol	39.79	35.28
Bra040854.1-P	Field mustard	cytosol	42.73	34.99
CDY66581	Canola	cytosol	36.85	34.03
AT4G09160.1	Thale cress	cytosol	38.06	32.93
CDY05051	Canola	nucleus	38.24	31.84

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865
PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF143
SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:TraesCS3B01G417500
EnsemblPlants:TraesCS3B01G417500.1	TIGR:cd00170	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:+:654423939..654426302

Molecular Weight (calculated)

62999.0 Da

IEP (calculated)

4.424

GRAVY (calculated)

-0.462

Length

578 amino acids

Sequence
(BLAST)

001: MAEEPQPQAA AAAAAATEVV VAEKAPAEVE KKAEEPAAEA EAEETAAVAD DGGAVEATGS FKEESNLVAD LPDPEKKALD EFKELIVAAL AAGEFNLPPP
101: PPPPKAKTEA AAEETKTEAP AKEEAKTEEP AKAEEPAKEE YKAEEPAKEE PKAEAAAEPA AEEAKAEVAA EAAAEEPAKE EPKAEEAKPA EPKKEEEAVV
201: AAEEGSKTAE AAEETAAATS EQAPEAEAAA PEPVFIWGVP LVGDDERTDA VLLKFLRARE FKVKEAMGML RSAVLWRKRF GIESLLEADL AFPELEKVVF
301: YRGADREGHP VCYNVYGEFQ DKEVYEKAFG DEEKRERFLK WRIQLLERGI LSQLDFAPSG ICSMVQVTDL KNSPPMLGKH RAVTRQAVAL LQDNYPEFIA
401: KKVFINVPWW YLAANKMMSP FLTQRTKSKF VFASQAKSPE TLFRYIAPEQ VPVQFGGLFK EDDPDFTTSD SVTELTIKAS SKETIEIPVT ENSTIVWELR
501: VLGWEVSHGA EFTPDAEGAY TVIVQKTRKV PANEEPIMKG SFKAGEAGKI VLTISNAASK KKKLLYRSKV KSSTVESV

Best Arabidopsis Sequence Match ( AT4G09160.2 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE TETVKSEVLN HAAEDSEQPR GVTPTPETET SEADTSLLVT SETEEPNHAA EDYSETEPSQ KLMLEQRRKY MEVEDWTEPE
201: LPDEAVLEAA ASVPEPKQPE PQTPPPPPST TTSTVASRSL AEMMNREEAE VEEKQKIQIP RSLGSFKEET NKISDLSETE LNALQELRHL LQVSQDSSKT
301: SIWGVPLLKD DRTDVVLLKF LRARDFKPQE AYSMLNKTLQ WRIDFNIEEL LDENLGDDLD KVVFMQGQDK ENHPVCYNVY GEFQNKDLYQ KTFSDEEKRE
401: RFLRWRIQFL EKSIRNLDFV AGGVSTICQV NDLKNSPGPG KTELRLATKQ ALHLLQDNYP EFVSKQIFIN VPWWYLAFYR IISPFMSQRS KSKLVFAGPS
501: RSAETLLKYI SPEHVPVQYG GLSVDNCECN SDFTHDDIAT EITVKPTTKQ TVEIIVYEKC TIVWEIRVVG WEVSYGAEFV PENKEGYTVI IQKPRKMTAK
601: NELVVSHSFK VGEVGRILLT VDNPTSTKKM LIYRFKVKPL ACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.