Factsheet for Zm00001d012254_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G72160.1	Zm00001d052380_P001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G082150.1	Barley	cytosol	54.68	88.37
KXG33790	Sorghum	cytosol	92.09	86.78
Zm00001d042664_P001	Maize	plasma membrane	88.49	86.16
Zm00001d005249_P001	Maize	mitochondrion	39.03	78.34
Zm00001d005304_P001	Maize	mitochondrion	37.23	76.1
Os01t0874700-01	Rice	plasma membrane	83.45	75.69
Zm00001d043169_P001	Maize	cytosol	28.6	75.36
TraesCS3A01G385300.1	Wheat	cytosol	78.06	75.09
TraesCS3B01G417500.1	Wheat	golgi	77.7	74.74
TraesCS3D01G378300.1	Wheat	cytosol	77.34	73.25
Zm00001d041705_P001	Maize	cytosol, mitochondrion	14.03	72.9
HORVU3Hr1G082110.2	Barley	plastid	77.88	67.13
Zm00001d038262_P001	Maize	plasma membrane	73.74	66.13
GSMUA_Achr7P23220_001	Banana	cytosol	57.91	64.4
VIT_09s0002g09040.t01	Wine grape	cytosol	13.13	64.04
KRG99105	Soybean	cytosol	16.55	62.16
Zm00001d010205_P002	Maize	cytosol	59.35	61.22
Bra000675.1-P	Field mustard	cytosol	33.27	59.68
GSMUA_Achr6P18780_001	Banana	cytosol	61.33	58.79
CDX90715	Canola	cytosol	32.55	58.39
GSMUA_Achr3P22170_001	Banana	cytosol	54.5	57.6
GSMUA_Achr5P25970_001	Banana	cytosol	56.83	56.94
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.91	54.95
CDY58916	Canola	cytosol	13.31	53.62
VIT_07s0031g03220.t01	Wine grape	cytosol	48.92	52.11
KRH54012	Soybean	nucleus	51.8	51.71
KRH63933	Soybean	plasma membrane	51.62	51.53
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	44.42	50.41
PGSC0003DMT400065886	Potato	cytosol	44.42	50.31
KRH59683	Soybean	cytosol	48.2	49.72
VIT_18s0041g00430.t01	Wine grape	cytosol	53.78	49.34
Zm00001d052665_P001	Maize	cytosol	17.81	49.01
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	55.04	48.96
CDY50441	Canola	plasma membrane	42.09	48.25
CDX82180	Canola	nucleus	42.27	48.06
CDY03654	Canola	nucleus	42.27	48.06
Bra008013.1-P	Field mustard	nucleus	42.81	47.98
Bra003891.1-P	Field mustard	cytosol	43.17	47.62
AT1G72160.1	Thale cress	nucleus	41.91	47.55
Solyc06g064940.2.1	Tomato	nucleus	49.28	47.24
KRH23751	Soybean	endoplasmic reticulum	51.44	47.19
KRH41016	Soybean	endoplasmic reticulum	48.74	47.13
KRH44929	Soybean	endoplasmic reticulum	48.56	46.88
PGSC0003DMT400013297	Potato	cytosol	48.56	46.79
CDX68278	Canola	cytosol	36.69	46.47
VIT_05s0029g01570.t01	Wine grape	cytosol	33.09	45.77
Solyc11g051160.1.1	Tomato	extracellular, plastid	48.02	45.33
VIT_18s0041g00420.t01	Wine grape	cytosol	46.76	44.67
CDX68279	Canola	cytosol	42.63	44.63
CDX96377	Canola	cytosol	43.88	43.88
Bra016084.1-P	Field mustard	cytosol	43.88	43.73
Bra008012.1-P	Field mustard	cytosol	43.88	43.42
Bra003892.1-P	Field mustard	cytosol	40.47	43.1
CDY03655	Canola	cytosol	43.53	42.83
CDY71835	Canola	cytosol	21.76	42.31
AT1G72150.1	Thale cress	cytosol	43.35	42.06
CDX82182	Canola	cytosol	43.35	41.91
CDY71842	Canola	cytosol	35.43	40.96
Zm00001d038005_P001	Maize	mitochondrion, plastid	31.47	40.89
Zm00001d046995_P001	Maize	plasma membrane	37.41	39.32
Zm00001d010049_P001	Maize	plastid	32.55	36.06
CDY21368	Canola	cytosol	41.91	35.74
AT1G22530.1	Thale cress	cytosol	43.53	35.43
Bra040854.1-P	Field mustard	cytosol	44.96	35.41
CDY66581	Canola	cytosol	39.57	35.14
AT4G09160.1	Thale cress	cytosol	40.29	33.53
CDY05051	Canola	nucleus	40.65	32.56

Protein Annotations

EntrezGene:103636439	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:AQK99206.1	ProteinID:AQK99207.1	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	UniProt:K7V6Z1	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000221EBF0	EnsemblPlantsGene:Zm00001d012254	EnsemblPlants:Zm00001d012254_P003	EnsemblPlants:Zm00001d012254_T003
SEG:seg	:	:	:	:	:

Description

Putative patellin family protein

Coordinates

chr8:-:171064822..171067905

Molecular Weight (calculated)

61331.4 Da

IEP (calculated)

4.393

GRAVY (calculated)

-0.458

Length

556 amino acids

Sequence
(BLAST)

001: MAEETQPEAA AEAEVVVTEP APAPAEAEVP AAADAEAVTE TEKKADEPAV TADDAGKGTG SFKEESNLVE DLPDPEKKVL DEFKHLIAAA LAAGEFNLPP
101: PPPPPKAKEE PKAEETKTEE SKTEDPAEEE PKAESAAEEP KAEVAANAPD EEVKTEVPPV EEAKAETVAV EAKPAEPEPQ EKTVVVAEEE PATKTVEAIE
201: ESVVSADEAA APEPVLVWGV PLVGDDERTD TVLLKFLRAR EFKVKEAMAM LKSAVLWRKR FGITSLLDAD LGLPELENVV FYRGADREGH PVCYNVYGEF
301: QDKDLYEKAF GDDEKRERFL KWRIQLLERG ILSKLDFSPN GICSMVQVTD LKNSPPMLGK HRAVTRQAVT LLQDNYPEFI AKKVFINVPW WYLAANKMMS
401: PFFTQRTKSK FVFASPAKSA ETLFRYIAPE QVPVQFGGLF KEDDPEFTTL DTVTELTIKP SSKETIEIPV TENSAIVWEL RVLGWEVSYS AEFTPDTEGG
501: YTVIIQKTRK VPANEEPIMK GSFKVGEPGK LVLTVNNPAS KKKKLLYRSK VKSISE

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.