CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90715	Canola	cytosol	43.95	98.39
Bra000675.1-P	Field mustard	cytosol	43.8	98.06
VIT_09s0002g09040.t01	Wine grape	cytosol	13.26	80.7
AT4G09160.1	Thale cress	cytosol	72.62	75.45
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	37.9	62.03
CDY50441	Canola	plasma membrane	43.23	61.86
CDX82180	Canola	nucleus	43.23	61.35
CDY03654	Canola	nucleus	42.8	60.74
PGSC0003DMT400065886	Potato	cytosol	42.07	59.47
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	41.64	58.98
CDX68278	Canola	cytosol	36.89	58.31
GSMUA_Achr2P08100_001	Banana	cytosol	32.56	56.93
HORVU3Hr1G082150.1	Barley	cytosol	27.95	56.4
Zm00001d041705_P001	Maize	cytosol, mitochondrion	8.5	55.14
Zm00001d005249_P001	Maize	mitochondrion	21.47	53.79
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	34.44	52.41
CDY58916	Canola	cytosol	10.37	52.17
Zm00001d043169_P001	Maize	cytosol	15.85	52.13
Zm00001d005304_P001	Maize	mitochondrion	19.88	50.74
GSMUA_Achr7P23220_001	Banana	cytosol	34.87	48.4
CDY13832	Canola	cytosol, plastid	18.88	47.29
CDY29572	Canola	cytosol, plastid	18.88	47.29
CDX73635	Canola	cytosol, plastid	18.88	47.29
CDX78958	Canola	cytosol, plastid	18.88	47.29
VIT_05s0029g01570.t01	Wine grape	cytosol	27.09	46.77
VIT_18s0041g00420.t01	Wine grape	cytosol	38.76	46.22
CDX78026	Canola	cytosol, plastid	26.95	45.39
CDX73705	Canola	cytosol, plastid	26.8	45.15
GSMUA_Achr3P22170_001	Banana	cytosol	33.72	44.49
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	32.85	43.85
CDX90637	Canola	cytosol	24.78	42.79
GSMUA_Achr6P18780_001	Banana	cytosol	34.01	40.69
Zm00001d012254_P003	Maize	mitochondrion	32.56	40.65
GSMUA_Achr5P25970_001	Banana	cytosol	32.13	40.18
Zm00001d042664_P001	Maize	plasma membrane	32.28	39.23
EES10230	Sorghum	cytosol	28.53	38.67
CDY02316	Canola	cytosol	23.78	38.28
TraesCS3A01G385300.1	Wheat	cytosol	31.84	38.24
TraesCS3B01G417500.1	Wheat	golgi	31.84	38.24
KXG33790	Sorghum	cytosol	32.42	38.14
Os05t0429400-01	Rice	plasma membrane	32.13	38.12
Os01t0874700-01	Rice	plasma membrane	33.43	37.85
TraesCS3D01G378300.1	Wheat	cytosol	31.99	37.82
CDY71835	Canola	cytosol	15.56	37.76
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	33.72	37.44
OQU78068	Sorghum	cytosol	27.52	36.31
TraesCS1B01G279200.1	Wheat	cytosol	31.84	36.23
TraesCS1D01G268600.1	Wheat	golgi	31.84	36.23
Zm00001d038262_P001	Maize	plasma membrane	32.28	36.13
TraesCS1A01G268500.1	Wheat	cytosol	31.7	36.07
CDX68279	Canola	cytosol	27.09	35.4
CDX77578	Canola	cytosol	26.95	35.15
CDX96377	Canola	cytosol	27.95	34.89
CDY09549	Canola	nucleus	26.66	34.58
HORVU3Hr1G082110.2	Barley	plastid	31.99	34.42
CDY50723	Canola	nucleus	26.22	34.34
CDY03655	Canola	cytosol	27.67	33.98
HORVU1Hr1G075150.4	Barley	plasma membrane	32.28	33.73
CDX82182	Canola	cytosol	27.67	33.39
Zm00001d010205_P002	Maize	cytosol	25.36	32.65
CDY71842	Canola	cytosol	22.05	31.81
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	24.21	28.19
CDY21368	Canola	cytosol	26.08	27.76
CDY66581	Canola	cytosol	23.78	26.36

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078EUZ9	EnsemblPlants:CDY05051	ProteinID:CDY05051	ProteinID:CDY05051.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	EnsemblPlantsGene:GSBRNA2T00119806001
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0004EED639	SEG:seg	:	:	:

Description

BnaC03g28490D

Coordinates

chrLK031959:+:257913..260517

Molecular Weight (calculated)

78540.8 Da

IEP (calculated)

4.536

GRAVY (calculated)

-0.756

Length

694 amino acids

Sequence
(BLAST)

001: MSQDSATTTT ASPPRPSTAV ETMPKDSHTN PSSSLMKQDF KDEEEKPKQL PLEPEMIQPP PVTPEPNPQL SSDQDSSLPL VPEPEETNNA AEVTEQSHQV
101: TPETATLEQE GPEHAAENSE PPVTTEPNPQ RISEPEETNH AIEVSEQPHQ VTPETVTLEQ EGSNHAAEDS EPLAVTAEKM SSEPEGLKHA AEDSEQPHQV
201: RPETEPEEPN HTVESDSEKP HQVTPETEPT QKLMLEKRKK YTEVADWTEP EPPDAAVLEA AASAPQPKQT EPQNPVVAAQ PPASSVKTRS LAEMMNREEA
301: EEKPKIQIPH SLGSFKEETN RISDLSVHEL NALHELRHLL QESTTIDSSK SFIWGVPLLK DDRSDVVLLK YLRARDFKPQ EAYSMLTKTL QWRMEFNIEE
401: LLDENLGDDL DKVVFMQGQD RENHPVCYNV YGEFQDKDLY RKTFSDEEKR DRFLRWRIQF LEQSIRKLDF VAGGVSTICQ VNDLKNSPGP GKTELRVATK
501: QALHLLQDNY PEFISKQIFI NVPWWYLAFY RIISPFMTQR SKSKLVFSGP SRSAETLFKY ISPEHVPVQY GGLSVDNCDC NSDFTHEDTA TEITVKPTTK
601: QTVEIIIYER CTIVWEIRVV GWEVMYGAEF VPENKEGYTV IIQKPRKMAS GDEPVVSQSF KVGEVGKILL TVDNPTSNKK ILIYRFKVKP LPCE

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.