Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005029_P001 | |
| Zm00001d052380_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72160.1 | Zm00001d005029_P001 | AT3G54220.1 | 19228333 |
| AT1G72160.1 | Zm00001d052380_P001 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041705_P001 | Maize | cytosol, mitochondrion | 35.55 | 70.09 |
| Zm00001d005304_P001 | Maize | mitochondrion | 84.36 | 65.44 |
| Zm00001d005249_P001 | Maize | mitochondrion | 83.41 | 63.54 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 26.54 | 49.12 |
| KRG99105 | Soybean | cytosol | 32.7 | 46.62 |
| Zm00001d052665_P001 | Maize | cytosol | 36.02 | 37.62 |
| Bra000675.1-P | Field mustard | cytosol | 52.13 | 35.48 |
| CDX90715 | Canola | cytosol | 51.66 | 35.16 |
| OQU78068 | Sorghum | cytosol | 84.36 | 33.84 |
| Os05t0429400-01 | Rice | plasma membrane | 80.09 | 28.89 |
| Zm00001d038262_P001 | Maize | plasma membrane | 84.83 | 28.87 |
| Zm00001d012254_P003 | Maize | mitochondrion | 75.36 | 28.6 |
| Zm00001d042664_P001 | Maize | plasma membrane | 76.78 | 28.37 |
| TraesCS1D01G268600.1 | Wheat | golgi | 81.99 | 28.36 |
| TraesCS1B01G279200.1 | Wheat | cytosol | 81.99 | 28.36 |
| TraesCS1A01G268500.1 | Wheat | cytosol | 81.99 | 28.36 |
| Zm00001d010205_P002 | Maize | cytosol | 70.62 | 27.64 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 64.93 | 27.4 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 54.98 | 27.36 |
| HORVU1Hr1G075150.4 | Barley | plasma membrane | 80.57 | 25.6 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 62.56 | 25.1 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 64.93 | 24.68 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 46.45 | 24.38 |
| VIT_07s0031g03220.t01 | Wine grape | cytosol | 60.19 | 24.33 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 56.4 | 24.29 |
| PGSC0003DMT400065886 | Potato | cytosol | 56.4 | 24.24 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 64.93 | 23.62 |
| CDY50441 | Canola | plasma membrane | 53.08 | 23.09 |
| CDY03654 | Canola | nucleus | 53.08 | 22.9 |
| CDX82180 | Canola | nucleus | 53.08 | 22.9 |
| AT1G72160.1 | Thale cress | nucleus | 53.08 | 22.86 |
| Bra008013.1-P | Field mustard | nucleus | 53.08 | 22.58 |
| KRH59683 | Soybean | cytosol | 57.35 | 22.45 |
| KRH63933 | Soybean | plasma membrane | 58.29 | 22.08 |
| KRH54012 | Soybean | nucleus | 58.29 | 22.08 |
| Bra003891.1-P | Field mustard | cytosol | 52.61 | 22.02 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 64.93 | 21.92 |
| Solyc11g051160.1.1 | Tomato | extracellular, plastid | 59.72 | 21.39 |
| KRH41016 | Soybean | endoplasmic reticulum | 57.82 | 21.22 |
| PGSC0003DMT400013297 | Potato | cytosol | 56.87 | 20.8 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 57.35 | 20.79 |
| Solyc06g064940.2.1 | Tomato | nucleus | 56.87 | 20.69 |
| KRH44929 | Soybean | endoplasmic reticulum | 56.4 | 20.66 |
| CDX68278 | Canola | cytosol | 42.65 | 20.5 |
| VIT_18s0041g00430.t01 | Wine grape | cytosol | 58.29 | 20.3 |
| CDY58916 | Canola | cytosol | 13.27 | 20.29 |
| KRH23751 | Soybean | endoplasmic reticulum | 57.82 | 20.13 |
| Zm00001d038005_P001 | Maize | mitochondrion, plastid | 40.28 | 19.86 |
| CDY71842 | Canola | cytosol | 41.23 | 18.09 |
| Zm00001d046995_P001 | Maize | plasma membrane | 45.02 | 17.96 |
| Zm00001d010049_P001 | Maize | plastid | 41.71 | 17.53 |
| CDY71835 | Canola | cytosol | 23.7 | 17.48 |
| Bra003892.1-P | Field mustard | cytosol | 41.23 | 16.67 |
| Bra008012.1-P | Field mustard | cytosol | 43.6 | 16.37 |
| CDY03655 | Canola | cytosol | 43.6 | 16.28 |
| CDX68279 | Canola | cytosol | 40.76 | 16.2 |
| CDX96377 | Canola | cytosol | 42.65 | 16.19 |
| AT4G09160.1 | Thale cress | cytosol | 51.18 | 16.17 |
| Bra016084.1-P | Field mustard | cytosol | 42.65 | 16.13 |
| AT1G72150.1 | Thale cress | cytosol | 43.6 | 16.06 |
| CDY05051 | Canola | nucleus | 52.13 | 15.85 |
| CDX82182 | Canola | cytosol | 42.65 | 15.65 |
| CDY66581 | Canola | cytosol | 45.97 | 15.5 |
| CDY21368 | Canola | cytosol | 44.08 | 14.26 |
| AT1G22530.1 | Thale cress | cytosol | 45.97 | 14.2 |
| Bra040854.1-P | Field mustard | cytosol | 46.45 | 13.88 |
Protein Annotations
| EnsemblPlants:Zm00001d043169_P001 | EnsemblPlants:Zm00001d043169_T001 | EnsemblPlantsGene:Zm00001d043169 | Gene3D:3.40.525.10 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf |
| InterPro:IPR001251 | InterPro:IPR036865 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF143 | PFAM:PF00650 | PFscan:PS50191 |
| ProteinID:ONM37163.1 | SMART:SM00516 | SUPFAM:SSF52087 | UniParc:UPI0008428AD7 | UniProt:A0A1D6N9E2 | MapMan:35.1 |
Description
Patellin-1
Coordinates
chr3:+:190498905..190500101
Molecular Weight (calculated)
24008.8 Da
IEP (calculated)
6.275
GRAVY (calculated)
-0.132
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKSAVLWRK RFGIDELLGV DLGLPELEKV VFYRGTDREG HPVYYNVWRI QLLERSIWEQ LDFSPSGICS MVQITDLKYS PPMLGKDHGV THQALALLQD
101: NYLEFVAKKV FINVPWWYLA TNKVMSLFLT QRTKSKIIFY SPDRSAETLF RYVAPEQVPV RFGGLYKEDD TEFSASNAVT ELTVKPSSKE TVEVPATEGS
201: TVVWPCGSSA C
101: NYLEFVAKKV FINVPWWYLA TNKVMSLFLT QRTKSKIIFY SPDRSAETLF RYVAPEQVPV RFGGLYKEDD TEFSASNAVT ELTVKPSSKE TVEVPATEGS
201: TVVWPCGSSA C
001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS
Arabidopsis Description
PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.