Factsheet for GSMUA_Achr11P26310_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

plastid 3
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	13.44	73.68
HORVU3Hr1G082150.1	Barley	cytosol	38.72	70.35
GSMUA_Achr5P25970_001	Banana	cytosol	62.24	70.09
GSMUA_Achr3P22170_001	Banana	cytosol	58.24	69.2
GSMUA_Achr7P23220_001	Banana	cytosol	54.72	68.4
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.68	68.22
GSMUA_Achr2P08100_001	Banana	cytosol	43.04	67.76
KRG99105	Soybean	cytosol	16.0	67.57
Zm00001d005249_P001	Maize	mitochondrion	29.92	67.51
Zm00001d005304_P001	Maize	mitochondrion	28.64	65.81
GSMUA_Achr6P18780_001	Banana	cytosol	60.64	65.34
Zm00001d043169_P001	Maize	cytosol	21.92	64.93
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	47.36	64.91
CDX90715	Canola	cytosol	30.72	61.94
Bra000675.1-P	Field mustard	cytosol	30.72	61.94
CDY58916	Canola	cytosol	12.64	57.25
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	45.92	55.19
Zm00001d042664_P001	Maize	plasma membrane	50.4	55.17
Zm00001d012254_P003	Maize	mitochondrion	48.96	55.04
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	37.28	54.95
VIT_07s0031g03220.t01	Wine grape	cytosol	45.76	54.79
KXG33790	Sorghum	cytosol	50.4	53.39
TraesCS3B01G417500.1	Wheat	golgi	49.12	53.11
TraesCS3A01G385300.1	Wheat	cytosol	49.12	53.11
Os01t0874700-01	Rice	plasma membrane	51.84	52.85
EES10230	Sorghum	cytosol	43.04	52.54
TraesCS3D01G378300.1	Wheat	cytosol	49.12	52.3
Os05t0429400-01	Rice	plasma membrane	48.8	52.14
TraesCS1B01G279200.1	Wheat	cytosol	50.24	51.48
TraesCS1D01G268600.1	Wheat	golgi	49.76	50.98
CDY50441	Canola	plasma membrane	38.88	50.1
PGSC0003DMT400065886	Potato	cytosol	39.36	50.1
KRH59683	Soybean	cytosol	43.2	50.09
KRH54012	Soybean	nucleus	44.64	50.09
TraesCS1A01G268500.1	Wheat	cytosol	48.8	50.0
CDY03654	Canola	nucleus	39.04	49.9
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	39.04	49.8
AT1G72160.1	Thale cress	nucleus	39.04	49.8
KRH63933	Soybean	plasma membrane	44.32	49.73
CDX82180	Canola	nucleus	38.72	49.49
Bra008013.1-P	Field mustard	nucleus	39.2	49.4
VIT_18s0041g00430.t01	Wine grape	cytosol	47.84	49.34
OQU78068	Sorghum	cytosol	40.96	48.67
KRH41016	Soybean	endoplasmic reticulum	44.32	48.17
CDX68278	Canola	cytosol	33.76	48.06
Bra003891.1-P	Field mustard	cytosol	38.72	48.02
PGSC0003DMT400013297	Potato	cytosol	44.16	47.83
HORVU3Hr1G082110.2	Barley	plastid	49.28	47.75
Zm00001d038262_P001	Maize	plasma membrane	47.36	47.74
Solyc06g064940.2.1	Tomato	nucleus	43.2	46.55
KRH44929	Soybean	endoplasmic reticulum	42.88	46.53
VIT_05s0029g01570.t01	Wine grape	cytosol	29.76	46.27
HORVU1Hr1G075150.4	Barley	plasma membrane	48.96	46.08
Solyc11g051160.1.1	Tomato	extracellular, plastid	43.2	45.84
KRH23751	Soybean	endoplasmic reticulum	44.16	45.54
Zm00001d010205_P002	Maize	cytosol	39.2	45.45
VIT_18s0041g00420.t01	Wine grape	cytosol	40.96	43.99
CDX96377	Canola	cytosol	37.92	42.63
CDX68279	Canola	cytosol	36.16	42.56
Bra016084.1-P	Field mustard	cytosol	37.76	42.29
GSMUA_Achr9P17890_001	Banana	cytosol	26.4	41.88
Bra008012.1-P	Field mustard	cytosol	37.6	41.81
AT1G72150.1	Thale cress	cytosol	38.24	41.71
GSMUA_Achr2P18920_001	Banana	plastid	28.16	41.71
GSMUA_Achr5P07450_001	Banana	plastid	26.4	41.67
CDY71835	Canola	cytosol	19.04	41.61
CDY03655	Canola	cytosol	37.6	41.59
CDX82182	Canola	cytosol	37.28	40.52
Bra003892.1-P	Field mustard	cytosol	33.6	40.23
GSMUA_Achr3P09950_001	Banana	plastid	27.04	39.86
CDY71842	Canola	cytosol	29.76	38.67
GSMUA_Achr1P05640_001	Banana	cytosol	25.12	37.83
GSMUA_Achr9P30580_001	Banana	cytosol	32.64	37.5
AT1G22530.1	Thale cress	cytosol	37.92	34.7
AT4G09160.1	Thale cress	cytosol	36.8	34.43
CDY05051	Canola	nucleus	37.44	33.72
Bra040854.1-P	Field mustard	cytosol	36.32	32.15
CDY21368	Canola	cytosol	33.28	31.9
CDY66581	Canola	cytosol	30.88	30.83

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSMUA_Achr11G26310_001	EnsemblPlants:GSMUA_Achr11P26310_001	EnsemblPlants:GSMUA_Achr11T26310_001	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	UniProt:M0RVL1	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000295D15E	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G26310_001]

Coordinates

chr11:+:25167999..25171492

Molecular Weight (calculated)

68480.5 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.415

Length

625 amino acids

Sequence
(BLAST)

001: MKRISKHQSI GGPCQLQPAH NKEKTSSTSP FRTGICNLLN YFEVGRTQLK LGQKGFCGCH ICCSGSPCLV IFGCSFQPLL LLKSYMLTGC LAKASEAVPA
101: AEFVVAEAPS ESEPKEPAAE EKKPEADEKK TEAQEVASPA DEAPAESEPK EPAAEEMKSE AKEKKNEVQE VASPADETAA PDVDPQKKAL DELKELVQAA
201: LANNEFNPPP PPPPPPTAPA EEPEAAPAEA PAPASTVKAI EETFVPVAAP PPAAEEVPPA AEDSAKEPPE EDPAPAPAAP PEEVFIWGIP LVGDDKSDTI
301: LLKFLQARDF KVKDALAMLK DAVIWRKQFG IEALLEEDVG LPELDKVVYM HGVDKEGHPV CYNVYGEFHD KELYEKTFGD ADKRRKFLKW RIQYLEKGIR
401: EKLDFTPGGI SSMVQVTDLK NSPRIGKHRQ VTKQAVTLLQ DNYPEFIAKK VFINVPWWYL AVNRMMSPFF TQRTKSKFVF AGPSRSAETL FKYIAPEQVP
501: VALGGLSKDD DRDFTAADAA TDVSIKPSSK QTIEMPATEA CVLVWELRVL GWEVSYGAEF TPSAEDGYTV IVHKTRKLAA VDEPVIKGSF KIGEPGKVVL
601: SIDNPTSKKK LLLYRHKVKS CSESN

Best Arabidopsis Sequence Match ( AT1G22530.2 )
(BLAST)

001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKEEEKA APGETKKEEK ATASTQVKRA SKFIKDIFVS VTTSEKKKEE EKPAVVTIEK AFAADQEEET KTVEAVEESI
301: VSITLPETAA YVEPEEVSIW GIPLLEDERS DVILLKFLRA RDFKVKEAFT MLKNTVQWRK ENKIDDLVSE DLEGSEFEKL VFTHGVDKQG HVVIYSSYGE
401: FQNKEIFSDK EKLSKFLKWR IQFQEKCVRS LDFSPEAKSS FVFVSDFRNA PGLGQRALWQ FIKRAVKQFE DNYPEFVAKE LFINVPWWYI PYYKTFGSII
501: TSPRTRSKMV LSGPSKSAET IFKYVAPEVV PVKYGGLSKD SPFTVEDGVT EAVVKSTSKY TIDLPATEGS TLSWELRVLG ADVSYGAQFE PSNEASYTVI
601: VSKNRKVGLT DEPVITDSFK ASEAGKVVIT IDNQTFKKKK VLYRSKTQA

Arabidopsis Description

PATL2Patellin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.