Factsheet for GSMUA_Achr1P05640_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g03430.t01	Wine grape	cytosol	51.33	47.44
GSMUA_Achr2P18920_001	Banana	plastid	40.24	39.57
GSMUA_Achr9P17890_001	Banana	cytosol	37.11	39.09
GSMUA_Achr2P08100_001	Banana	cytosol	36.63	38.29
GSMUA_Achr9P30580_001	Banana	cytosol	49.88	38.05
GSMUA_Achr3P09950_001	Banana	plastid	38.8	37.97
KRH19560	Soybean	cytosol	42.89	37.87
GSMUA_Achr5P07450_001	Banana	plastid	35.9	37.63
KRH32187	Soybean	cytosol	41.93	36.86
PGSC0003DMT400026646	Potato	cytosol	38.31	35.73
Solyc09g025230.2.1	Tomato	cytosol	38.31	35.33
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	37.59	34.21
GSMUA_Achr7P23220_001	Banana	cytosol	41.2	34.2
GSMUA_Achr3P22170_001	Banana	cytosol	40.0	31.56
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	37.35	29.81
GSMUA_Achr5P25970_001	Banana	cytosol	38.07	28.47
GSMUA_Achr6P18780_001	Banana	cytosol	39.52	28.28
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	37.83	25.12

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	EnsemblPlantsGene:GSMUA_Achr1G05640_001	EnsemblPlants:GSMUA_Achr1P05640_001	EnsemblPlants:GSMUA_Achr1T05640_001	InterPro:IPR001251	InterPro:IPR036865
UniProt:M0RXC2	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF82
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002955418	SEG:seg

Description

Patellin-4 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05640_001]

Coordinates

chr1:+:4648529..4650091

Molecular Weight (calculated)

47470.8 Da

IEP (calculated)

5.202

GRAVY (calculated)

-0.474

Length

415 amino acids

Sequence
(BLAST)

001: MGDTTDVVVT DDETTVPENL KSSEKKALLE LRTMLEDAIA AEEAEEDLSD VSLWGVPLLP SRKHESTDVI LLKFLRAREF KAAEALDMIG RTLRWRRDFG
101: VDGMMEGEGG ADAAPPQPPP PHLKSAAYID GRDREGHPVC YNIYGVFKDK DVYRQTFGDE ERQEKFLRWR VQLMEQGIKQ MSLKPGGAAA MLHIIDFKDS
201: LRPGMRELRS ATREIVSIMQ DNYPEFVAKN IFLNVSFRYY AYHALFSPFI TPRTRSKFIF ARPAKVTETL LKFMSPENIP VQYGGLRRGE DDDEFSAENE
301: RASELVIRGG GIGRIEIPIL EPGVTVVWDI TVVGWDVNYR EEFIPEDEGS YKILIQNEKK PEECIRNSFY ISEPGKVVLT VENRTFKKKR VFYRSKSKPT
401: IPLYDLLSQT QQPQL

Best Arabidopsis Sequence Match ( AT1G30690.2 )
(BLAST)

001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS

Arabidopsis Description

PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.