Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
21334471
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr5P21440_001 | |
| GSMUA_Achr8P09400_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72160.1 | GSMUA_Achr11P... | AT3G54220.1 | 19228333 |
| AT1G72160.1 | GSMUA_Achr5P21440_001 | AT3G54220.1 | 19228333 |
| AT1G72160.1 | GSMUA_Achr8P09400_001 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P08100_001 | Banana | cytosol | 68.64 | 78.84 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 18.64 | 74.56 |
| KRG99105 | Soybean | cytosol | 23.25 | 71.62 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 69.3 | 63.2 |
| Bra000675.1-P | Field mustard | cytosol | 42.76 | 62.9 |
| CDX90715 | Canola | cytosol | 42.11 | 61.94 |
| GSMUA_Achr6P07270_001 | Banana | cytosol, nucleus, plastid | 67.54 | 59.23 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 52.63 | 56.6 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 64.04 | 55.51 |
| CDY58916 | Canola | cytosol | 16.67 | 55.07 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 69.74 | 54.83 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 66.45 | 54.59 |
| CDY50441 | Canola | plasma membrane | 56.36 | 52.99 |
| CDX82180 | Canola | nucleus | 56.36 | 52.56 |
| CDY03654 | Canola | nucleus | 56.36 | 52.56 |
| AT1G72160.1 | Thale cress | nucleus | 56.36 | 52.45 |
| PGSC0003DMT400065886 | Potato | cytosol | 55.92 | 51.93 |
| Bra008013.1-P | Field mustard | nucleus | 56.36 | 51.81 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 55.48 | 51.63 |
| VIT_07s0031g03220.t01 | Wine grape | cytosol | 58.99 | 51.53 |
| Bra003891.1-P | Field mustard | cytosol | 55.7 | 50.4 |
| KRH59683 | Soybean | cytosol | 59.21 | 50.09 |
| CDX68278 | Canola | cytosol | 47.59 | 49.43 |
| KRH63933 | Soybean | plasma membrane | 60.09 | 49.19 |
| KRH54012 | Soybean | nucleus | 59.21 | 48.47 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 42.32 | 48.01 |
| KRH41016 | Soybean | endoplasmic reticulum | 60.53 | 48.0 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 64.91 | 47.36 |
| KRH44929 | Soybean | endoplasmic reticulum | 58.33 | 46.18 |
| VIT_18s0041g00430.t01 | Wine grape | cytosol | 59.87 | 45.05 |
| CDY71835 | Canola | cytosol | 28.07 | 44.76 |
| PGSC0003DMT400013297 | Potato | cytosol | 56.14 | 44.37 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 56.58 | 44.33 |
| Solyc06g064940.2.1 | Tomato | nucleus | 55.7 | 43.79 |
| KRH23751 | Soybean | endoplasmic reticulum | 57.89 | 43.56 |
| Solyc11g051160.1.1 | Tomato | extracellular, plastid | 56.14 | 43.46 |
| GSMUA_Achr2P18920_001 | Banana | plastid | 39.91 | 43.13 |
| GSMUA_Achr5P07450_001 | Banana | plastid | 37.06 | 42.68 |
| GSMUA_Achr3P09950_001 | Banana | plastid | 38.6 | 41.51 |
| GSMUA_Achr9P17890_001 | Banana | cytosol | 35.53 | 41.12 |
| CDX68279 | Canola | cytosol | 46.71 | 40.11 |
| CDX96377 | Canola | cytosol | 48.03 | 39.39 |
| Bra008012.1-P | Field mustard | cytosol | 48.46 | 39.32 |
| CDY03655 | Canola | cytosol | 48.46 | 39.12 |
| Bra016084.1-P | Field mustard | cytosol | 47.81 | 39.07 |
| AT1G72150.1 | Thale cress | cytosol | 48.25 | 38.39 |
| CDX82182 | Canola | cytosol | 48.25 | 38.26 |
| Bra003892.1-P | Field mustard | cytosol | 43.64 | 38.12 |
| GSMUA_Achr1P05640_001 | Banana | cytosol | 34.21 | 37.59 |
| AT4G09160.1 | Thale cress | cytosol | 53.51 | 36.53 |
| GSMUA_Achr9P30580_001 | Banana | cytosol | 43.42 | 36.4 |
| CDY71842 | Canola | cytosol | 37.72 | 35.76 |
| CDY05051 | Canola | nucleus | 52.41 | 34.44 |
| AT1G22530.1 | Thale cress | cytosol | 47.59 | 31.77 |
| Bra040854.1-P | Field mustard | cytosol | 47.81 | 30.88 |
| CDY21368 | Canola | cytosol | 43.42 | 30.37 |
| CDY66581 | Canola | cytosol | 39.69 | 28.91 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf |
| ncoils:Coil | InterPro:GOLD_dom | EnsemblPlantsGene:GSMUA_Achr9G08580_001 | EnsemblPlants:GSMUA_Achr9P08580_001 | EnsemblPlants:GSMUA_Achr9T08580_001 | InterPro:IPR001251 |
| InterPro:IPR009038 | InterPro:IPR036865 | UniProt:M0TYL7 | PFAM:PF00650 | PFAM:PF03765 | PRINTS:PR00180 |
| PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF96 | SMART:SM00516 | SMART:SM01100 |
| SUPFAM:SSF46938 | SUPFAM:SSF52087 | UniParc:UPI0002969547 | SEG:seg | : | : |
Description
Patellin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G08580_001]
Coordinates
chr9:-:5517853..5520067
Molecular Weight (calculated)
51146.2 Da
IEP (calculated)
4.906
GRAVY (calculated)
-0.348
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMETRPDEP EAAPAKEVVV AEVLSAEKEV VDKETSPEAA IEADTPGKKP ALEAALAAEA EEEAGEKKAA VQEVEAKESS VVAADREDPE KKALDELKQL
101: VRAALSNKEG NRRAQEIFIW GVPLLGDERS DTVLLKFLRA RDFKVKEAMT MLKNAVLWRK EFGIEELLNE DLGIPEMEKV VFMHGIDKEG HPVCYNVYGE
201: FQNKELYAAA FADEEKRKQF LRWRIQYLEK GIRNMLDFNP EGVSTMVQVT DLKNSIGLAK KELRQALDLL QDNYPEFAAK QVFINVPWWY LAFNRMISPF
301: FTQRTKSKFV FAGPSKSAET LFKYIAPEQV PVQFGGLSKE NDPDFSTSDA ATEITIKPSM KQAIEILVTE PCLLVWELRV LGWDVSYGAE FAPTAEDGYT
401: VIVQKARKLV AINDPVVKDS FKIGDAGKVV LTVGNTSSKK KKLLYRYKTK SSTDSI
101: VRAALSNKEG NRRAQEIFIW GVPLLGDERS DTVLLKFLRA RDFKVKEAMT MLKNAVLWRK EFGIEELLNE DLGIPEMEKV VFMHGIDKEG HPVCYNVYGE
201: FQNKELYAAA FADEEKRKQF LRWRIQYLEK GIRNMLDFNP EGVSTMVQVT DLKNSIGLAK KELRQALDLL QDNYPEFAAK QVFINVPWWY LAFNRMISPF
301: FTQRTKSKFV FAGPSKSAET LFKYIAPEQV PVQFGGLSKE NDPDFSTSDA ATEITIKPSM KQAIEILVTE PCLLVWELRV LGWDVSYGAE FAPTAEDGYT
401: VIVQKARKLV AINDPVVKDS FKIGDAGKVV LTVGNTSSKK KKLLYRYKTK SSTDSI
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
Arabidopsis Description
PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.