Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | plastid | 69.35 | 81.18 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 37.5 | 79.75 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 53.42 | 68.12 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 68.9 | 65.49 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 56.85 | 61.91 |
| CDX78219 | Canola | nucleus, plastid | 55.36 | 61.69 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 53.42 | 61.37 |
| CDX73496 | Canola | nucleus, plastid | 56.25 | 60.77 |
| Os12t0122000-01 | Rice | plastid | 57.59 | 58.64 |
| Os11t0124300-01 | Rice | nucleus, plastid | 56.7 | 58.53 |
| Zm00001d052380_P001 | Maize | plastid | 57.74 | 58.08 |
| TraesCS5B01G143100.1 | Wheat | plastid | 54.32 | 57.21 |
| TraesCS5A01G144000.1 | Wheat | plastid | 54.76 | 56.79 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 54.91 | 56.51 |
| TraesCS4B01G124000.1 | Wheat | plastid | 56.99 | 56.41 |
| TraesCS5D01G148000.1 | Wheat | plastid | 54.76 | 56.36 |
| TraesCS4D01G122000.1 | Wheat | plastid | 56.85 | 56.26 |
| Zm00001d005029_P001 | Maize | plastid | 55.21 | 54.72 |
| OQU82754 | Sorghum | plastid | 57.74 | 54.57 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 24.55 | 53.57 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 59.82 | 51.41 |
| KRH40615 | Soybean | nucleus, plastid | 56.55 | 46.17 |
| Solyc10g074680.1.1 | Tomato | cytosol | 56.55 | 46.0 |
| PGSC0003DMT400043358 | Potato | cytosol | 56.55 | 46.0 |
| KRH00551 | Soybean | nucleus, plastid | 56.4 | 45.01 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 18.6 | 35.11 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 21.58 | 32.51 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 17.56 | 31.98 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 17.71 | 31.07 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 21.43 | 30.44 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 17.11 | 30.34 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 21.58 | 30.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 16.96 | 29.84 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 19.05 | 28.7 |
| GSMUA_Achr8P01180_001 | Banana | nucleus | 18.9 | 27.79 |
| GSMUA_Achr10P... | Banana | nucleus | 18.01 | 27.56 |
| GSMUA_Achr10P... | Banana | cytosol | 19.49 | 27.41 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 22.92 | 26.69 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.39 | 25.61 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 23.36 | 25.57 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 20.83 | 24.96 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 18.75 | 24.42 |
| GSMUA_Achr6P20830_001 | Banana | nucleus | 21.88 | 24.1 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 23.21 | 24.0 |
| GSMUA_Achr6P34550_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 21.73 | 23.9 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 23.51 | 18.33 |
| GSMUA_Achr11P... | Banana | cytosol | 21.43 | 13.07 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P09400_001 | EnsemblPlants:GSMUA_Achr8T09400_001 | EnsemblPlantsGene:GSMUA_Achr8G09400_001 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| ncoils:Coil | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg |
| UniParc:UPI000295C2ED | UniProt:M0TNZ3 | MapMan:15.5.12 | MapMan:26.3.1.5 | : | : |
Description
Protein SCARECROW [Source:GMGC_GENE;Acc:GSMUA_Achr8G09400_001]
Coordinates
chr8:-:6573659..6576726
Molecular Weight (calculated)
71426.5 Da
IEP (calculated)
5.706
GRAVY (calculated)
-0.062
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKRLVSEL DLQPDSSYNP GRLPRRAATG ASSTSSGNPT CSGDFSGQPS VLLNPPSTLS VDAAQHSPAA SLLLPATATA THSAPLFTSL PPPALPSLTV
101: CGFSGLPLFP PETHRIALPA SRAEGLQLVA SSVAGVGASD DAAAGTDWVD GIIRDIVCSS AAGGEVSIPQ IVNSVREIVH PCNPGLAALL EFRLRDASMA
201: PPLPETVPPA NTASYLSSAA AVAGVGWEEP ASRLQGAQQK PQPPPQSRPP RSSNSASSDE ATAAAAAESA AAAAAAKEKR EELQQRKQEA EGLHLLTLLL
301: QCAEAVAADN LDEASLLLLE ISELSTPFGT SAQRVAAYFS EAMSARLVSS CLGLYSPLRT VPHRHRLASA FQVFNGISPF VKFSHFTANQ VIQEAFELED
401: RVHIIDFDIM QGLQWPGLFH ILASRPNGPP HVRLTGVGSS MEALEATGKR LSDFADTLGL PFDFVPVVEK VGNLNPERLG VSRQEALAVH WLRHSLYDVT
501: GSDTNTLWLL QRLAPKVVTM VEQDLSQAGS FLARFVEAIH YYSALFDSLG ASYGEDSQER HIVEQQLLSR EIRNVLAVGG PARTGQVKFS NWREKLSQSG
601: FRGVSLAGNA AAQATLLLGM FPSDGYTLVE ENGTLKLGWK DLCLLTASAW RPMIQHPSAT STTTHLVDNS LE
101: CGFSGLPLFP PETHRIALPA SRAEGLQLVA SSVAGVGASD DAAAGTDWVD GIIRDIVCSS AAGGEVSIPQ IVNSVREIVH PCNPGLAALL EFRLRDASMA
201: PPLPETVPPA NTASYLSSAA AVAGVGWEEP ASRLQGAQQK PQPPPQSRPP RSSNSASSDE ATAAAAAESA AAAAAAKEKR EELQQRKQEA EGLHLLTLLL
301: QCAEAVAADN LDEASLLLLE ISELSTPFGT SAQRVAAYFS EAMSARLVSS CLGLYSPLRT VPHRHRLASA FQVFNGISPF VKFSHFTANQ VIQEAFELED
401: RVHIIDFDIM QGLQWPGLFH ILASRPNGPP HVRLTGVGSS MEALEATGKR LSDFADTLGL PFDFVPVVEK VGNLNPERLG VSRQEALAVH WLRHSLYDVT
501: GSDTNTLWLL QRLAPKVVTM VEQDLSQAGS FLARFVEAIH YYSALFDSLG ASYGEDSQER HIVEQQLLSR EIRNVLAVGG PARTGQVKFS NWREKLSQSG
601: FRGVSLAGNA AAQATLLLGM FPSDGYTLVE ENGTLKLGWK DLCLLTASAW RPMIQHPSAT STTTHLVDNS LE
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.