Factsheet for GSMUA_Achr6P08220_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	nucleus
GSMUA_Achr1P09780_001	nucleus, nucleus
GSMUA_Achr1P14060_001
GSMUA_Achr2P05260_001	nucleus, nucleus
GSMUA_Achr2P06030_001	nucleus
GSMUA_Achr3P01010_001	nucleus, nucleus
GSMUA_Achr3P06030_001	nucleus
GSMUA_Achr3P13140_001	nucleus, nucleus
GSMUA_Achr4P07110_001	nucleus
GSMUA_Achr4P17950_001	nucleus
GSMUA_Achr4P20220_001	nucleus, nucleus
GSMUA_Achr5P26370_001
GSMUA_Achr6P07740_001	nucleus
GSMUA_Achr6P16910_001	nucleus
GSMUA_Achr7P19980_001	nucleus
GSMUA_Achr8P26900_001
GSMUA_Achr8P28400_001	nucleus
GSMUA_Achr9P28180_001	nucleus
GSMUA_AchrUn_...	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	GSMUA_Achr4P17950_001	AT1G47870.1	20407024
AT3G12280.1	GSMUA_Achr4P17950_001	AT1G47870.1	20706207
AT3G12280.1	GSMUA_Achr3P06030_001	AT1G70210.1	20407024
AT3G12280.1	GSMUA_Achr7P19980_001	AT1G70210.1	20407024
AT3G12280.1	GSMUA_Achr9P28180_001	AT1G70210.1	20407024
AT3G12280.1	GSMUA_Achr5P26370_001	AT3G20740.1	15221456
AT3G12280.1	GSMUA_Achr5P26370_001	AT3G20740.1	18812497
AT3G12280.1	GSMUA_Achr2P06030_001	AT3G24140.1	24571519
AT3G12280.1	GSMUA_Achr8P28400_001	AT3G24140.1	24571519
AT3G12280.1	GSMUA_Achr1P09780_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr2P05260_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr3P01010_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr3P13140_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr4P20220_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_AchrUn_...	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr1P14060_001	AT3G55760.1	20706207
AT3G12280.1	GSMUA_Achr8P26900_001	AT3G55760.1	20706207
AT3G12280.1	GSMUA_Achr1P09780_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr2P05260_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr3P01010_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr3P13140_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr4P20220_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_AchrUn_...	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr10P...	AT4G37630.1	20407024
AT3G12280.1	GSMUA_Achr4P07110_001	AT4G37630.1	20407024
AT3G12280.1	GSMUA_Achr6P07740_001	AT4G37630.1	20407024
AT3G12280.1	GSMUA_Achr6P16910_001	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00470_001	Banana	nucleus	58.54	58.31
VIT_04s0008g02780.t01	Wine grape	nucleus	56.84	56.56
KRH13310	Soybean	nucleus	55.44	55.22
KRH20664	Soybean	nucleus	55.64	54.93
KRH63701	Soybean	nucleus	55.24	54.54
AT3G12280.1	Thale cress	nucleus	54.45	53.8
CDY50559	Canola	nucleus	54.45	53.69
PGSC0003DMT400030280	Potato	nucleus	54.45	53.64
CDY52614	Canola	cytosol	53.95	53.57
CDY08440	Canola	nucleus	54.35	53.54
Bra038707.1-P	Field mustard	nucleus	54.45	53.48
Bra034764.1-P	Field mustard	nucleus	54.25	53.44
Solyc09g091280.2.1	Tomato	cytosol	54.35	53.44
CDY42141	Canola	cytosol	54.15	53.29
CDX73827	Canola	nucleus	53.35	52.82
Os11t0533500-01	Rice	nucleus	50.85	52.05
Bra001446.1-P	Field mustard	nucleus	53.15	51.8
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	45.15	51.78
TraesCS4A01G143200.1	Wheat	plastid	50.45	51.48
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	50.25	51.27
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	49.85	50.92
TraesCS4B01G162200.1	Wheat	nucleus	49.85	50.87
KXG21076	Sorghum	plastid	43.66	49.89
OQU83580	Sorghum	plastid	43.16	49.77
Zm00001d052666_P014	Maize	nucleus	45.15	49.02
VIT_14s0068g00840.t01	Wine grape	cytosol	28.57	48.64
CDY00765	Canola	mitochondrion	53.75	48.21
KXG26019	Sorghum	cytosol	11.89	44.24
CDY52391	Canola	nucleus	8.99	38.96

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	ncoils:Coil	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSMUA_Achr6G08220_001
EnsemblPlants:GSMUA_Achr6P08220_001	EnsemblPlants:GSMUA_Achr6T08220_001	UniProt:M0T571	PFAM:PF01857	PFAM:PF01858	PFAM:PF08934
PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A	InterPro:RB_B
InterPro:RB_C	InterPro:RB_N	InterPro:RB_fam	SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954
UniParc:UPI000295EC4C	SEG:seg	:	:	:	:

Description

Retinoblastoma-related protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G08220_001]

Coordinates

chr6:-:5472534..5481562

Molecular Weight (calculated)

112052.0 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.195

Length

1001 amino acids

Sequence
(BLAST)

0001: MEDPKPLISS ADDRGGDRIV DRFADLCKGL ALGGNTEREA MNVFKEGKNL FFASVTSFGS RSPEEIGRYW SAFVLYCVRR LSTGEAQEGQ KEGRITLCQI
0101: LRACDLAIVD FFNELPLFPL KAGHILTDLY GSDWDKRLEL KELQENVTQL IDLSKFYDKA FGEFFSTSNM RRKDQDSAAS GSVGNVQDFY RFGWLLFLAL
0201: RTHVFTHCKN LVICTKGLVS ILAILILHVP IGFRNFSVKD MSLFVKQSNG RVNLLASLSE IYHTSEDDLK RSMEVTYSLI IDILKKNPCC ASGCKTENLD
0301: HIDTEGLKVF EDLLEEKSLQ SSLEILEKDY SDLLNAKYEL DERIFINTED SLLDAKNMSG GTTRLFSTKS NLDDLASPAR WAASLLTPHS PPLLNGSLNC
0401: NSKIAPTPVS TAMTTAKWLR EFISPLHSKP SAELEHFLTS CDQDITSTVT RRANIILEAI FPSSSFGERS ISGSLQSVNM TEDVAWAQER KMEALKLYYK
0501: VLREICLAES RFLNHNNLTS LLSNERFHRC MLACSAELVL ATHKTVILMF PAVLDRTGLT AFDMSRVIET FIRYEETLPR ELKRHLNSLE ERLLESMAWE
0601: RGSSLYNSLI VARPALAAEI NSLGLLAEPM PSLDAIGMHH DNSIADLLPE LSQKAVTCPD NRGDARSPKR PCTENRSLFV QCNSTPTRKE HMLTFNYLKF
0701: KTPPLQSKFA SPSQPNPAGG EICAETVIRV FCNKILKLAA IRIKSLGEKL QLSQQILEYV YRMFQQILCQ RTSLFFNRHI DQIILCSLYG VAKVCRVDLT
0801: FKSIVNYYKT QPQCKPHVVK NIFVAVPSAN RNGRMVQEYV NIITFYNQIF IPSVKPLLVE LVPAGVAAED KNHADSQVPG SPKLSSFPNL PDMSPKKVSA
0901: AHNVYVSPLR QTKMDALISP SSRSFYACIG ESTHAYRSPS SDLTAINNRL NGGDGRNLKG RINFDIVSDS VVARILGKNS SASSDARATT NLPMKRDEPD
1001: P

Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.