Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P28180_001 | Banana | nucleus | 53.04 | 51.82 |
| VIT_01s0026g00710.t01 | Wine grape | nucleus | 53.72 | 49.07 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 53.04 | 49.06 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 53.38 | 48.77 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 63.51 | 48.33 |
| Os09t0382300-00 | Rice | nucleus | 50.0 | 48.05 |
| OQU89443 | Sorghum | nucleus | 54.05 | 48.05 |
| KRH69476 | Soybean | nucleus | 52.36 | 45.72 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 53.04 | 43.98 |
| KRG99255 | Soybean | nucleus | 50.34 | 42.82 |
| Solyc05g006050.2.1 | Tomato | nucleus | 47.97 | 42.14 |
| PGSC0003DMT400040287 | Potato | nucleus | 47.64 | 41.96 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 52.03 | 41.96 |
| KRH45743 | Soybean | nucleus | 50.68 | 41.67 |
| CDY38800 | Canola | nucleus | 44.26 | 41.07 |
| CDY11608 | Canola | nucleus | 43.92 | 41.01 |
| Zm00001d020353_P001 | Maize | nucleus | 45.61 | 40.79 |
| AT1G70210.1 | Thale cress | nucleus | 46.62 | 40.71 |
| Bra007901.1-P | Field mustard | nucleus | 45.95 | 40.12 |
| CDY67142 | Canola | nucleus | 45.95 | 40.12 |
| KRH74675 | Soybean | nucleus, plastid | 51.01 | 39.53 |
| CDY59943 | Canola | nucleus | 46.28 | 37.95 |
| Os06t0236600-00 | Rice | nucleus | 42.23 | 34.44 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 39.19 | 33.53 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 38.18 | 32.29 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 37.5 | 31.99 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 26.69 | 31.73 |
| GSMUA_Achr10P... | Banana | nucleus | 34.12 | 31.46 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 36.82 | 31.41 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 37.16 | 30.73 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 26.01 | 30.68 |
| GSMUA_Achr10P... | Banana | nucleus | 35.47 | 30.52 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 35.47 | 30.09 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 38.51 | 29.92 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 35.81 | 29.36 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 35.14 | 29.21 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 36.15 | 29.16 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 34.12 | 28.61 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 34.8 | 28.37 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 29.05 | 28.29 |
| GSMUA_Achr10P... | Banana | nucleus | 33.78 | 28.17 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 28.04 | 27.67 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 22.3 | 27.27 |
| GSMUA_Achr10P... | Banana | cytosol | 22.64 | 26.48 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 24.66 | 26.26 |
| GSMUA_Achr10P... | Banana | nucleus | 25.34 | 26.22 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 24.32 | 26.18 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 27.03 | 25.16 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 26.01 | 24.06 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 27.36 | 23.48 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 28.72 | 21.91 |
| GSMUA_AchrUn_... | Banana | cytosol | 23.31 | 21.77 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 29.05 | 21.13 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 25.68 | 20.99 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 28.72 | 20.14 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 27.36 | 19.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P06030_001 | EnsemblPlants:GSMUA_Achr3T06030_001 | EnsemblPlantsGene:GSMUA_Achr3G06030_001 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 | PFAM:PF00134 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002964EBC | UniProt:M0SC71 | MapMan:13.1.1.1.4 | : |
Description
Cyclin-D2-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06030_001]
Coordinates
chr3:+:4074083..4075484
Molecular Weight (calculated)
32989.3 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.072
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLTHYKDLG SYSDLLCDED ASELADDSPD RSRDAEFPDD SDESIAGFIE GEADYTPGFD YPARFRSNSL DSTSRREAVA WILKVSAYYR FQDLTSYLAV
101: NYMDRFLASH RLPQNVWALQ LLSVASLSLA AKMEETLVPT LLDLQIEGAE FVFEPRTIRR MELLVLGALD WRLRSVTPFT YMDFFACKLD PSGKSATYLI
201: SYIEFLSHCP SSLAAAAIIR AAEDVADLAL IDAGIAVSWC IGLTEDGIGN CYRLMRRVAE GAMLKNPLVN MGSRFSPASL PPAKRRRKMS IGGRIS
101: NYMDRFLASH RLPQNVWALQ LLSVASLSLA AKMEETLVPT LLDLQIEGAE FVFEPRTIRR MELLVLGALD WRLRSVTPFT YMDFFACKLD PSGKSATYLI
201: SYIEFLSHCP SSLAAAAIIR AAEDVADLAL IDAGIAVSWC IGLTEDGIGN CYRLMRRVAE GAMLKNPLVN MGSRFSPASL PPAKRRRKMS IGGRIS
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.