Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU89443 | Sorghum | nucleus | 73.72 | 73.27 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 62.84 | 64.2 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 61.93 | 64.06 |
| Os09t0382300-00 | Rice | nucleus | 58.01 | 62.34 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 60.73 | 56.3 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 62.24 | 56.13 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 40.79 | 45.61 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 38.97 | 42.57 |
| VIT_01s0026g00710.t01 | Wine grape | nucleus | 39.88 | 40.74 |
| KRH69476 | Soybean | nucleus | 41.09 | 40.12 |
| KRG99255 | Soybean | nucleus | 40.48 | 38.51 |
| Bra007901.1-P | Field mustard | nucleus | 38.97 | 38.05 |
| CDY67142 | Canola | nucleus | 38.97 | 38.05 |
| AT1G70210.1 | Thale cress | nucleus | 38.97 | 38.05 |
| CDY38800 | Canola | nucleus | 36.56 | 37.93 |
| CDY11608 | Canola | nucleus | 36.25 | 37.85 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 44.41 | 37.79 |
| KRH45743 | Soybean | nucleus | 40.48 | 37.22 |
| PGSC0003DMT400040287 | Potato | nucleus | 37.16 | 36.61 |
| CDY59943 | Canola | nucleus | 39.88 | 36.57 |
| Solyc05g006050.2.1 | Tomato | nucleus | 37.16 | 36.5 |
| KRH74675 | Soybean | nucleus, plastid | 39.88 | 34.55 |
| Zm00001d005928_P002 | Maize | nucleus | 28.1 | 25.76 |
| Zm00001d018128_P001 | Maize | nucleus | 26.59 | 24.79 |
| Zm00001d052185_P001 | Maize | nucleus | 26.59 | 24.44 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 21.45 | 23.13 |
| Zm00001d029407_P001 | Maize | nucleus | 24.17 | 23.12 |
| Zm00001d022175_P001 | Maize | nucleus | 25.98 | 22.81 |
| Zm00001d031837_P001 | Maize | nucleus | 27.79 | 21.7 |
| Zm00001d050475_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.24 | 21.68 |
| Zm00001d041345_P001 | Maize | cytosol | 20.85 | 19.77 |
| Zm00001d013728_P001 | Maize | cytosol | 21.15 | 19.18 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 20.24 | 18.98 |
| Zm00001d033330_P001 | Maize | nucleus | 20.24 | 18.93 |
| Zm00001d030894_P002 | Maize | nucleus | 19.03 | 18.26 |
| Zm00001d028092_P001 | Maize | cytosol | 14.2 | 17.28 |
| Zm00001d019696_P001 | Maize | cytosol | 18.73 | 16.02 |
| Zm00001d005293_P001 | Maize | cytosol | 18.73 | 15.86 |
| Zm00001d003439_P001 | Maize | plastid | 6.04 | 15.75 |
| Zm00001d044984_P001 | Maize | mitochondrion | 12.39 | 14.86 |
| Zm00001d048594_P001 | Maize | cytosol | 18.43 | 14.35 |
| Zm00001d049334_P001 | Maize | mitochondrion | 12.08 | 13.7 |
| Zm00001d038580_P001 | Maize | plastid | 12.99 | 12.91 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100283450 | MapMan:35.1 | UniProt:A0A1D6I3N7 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| ProteinID:ONM54755.1 | PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0008448CE2 | EnsemblPlantsGene:Zm00001d020353 | EnsemblPlants:Zm00001d020353_P001 | EnsemblPlants:Zm00001d020353_T001 |
| SEG:seg | : | : | : | : | : |
Description
Cyclin-D1-1
Coordinates
chr7:-:108629808..108634542
Molecular Weight (calculated)
35171.0 Da
IEP (calculated)
4.873
GRAVY (calculated)
0.162
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGDAYDLLC AEDDAAGSAL LCTTDDDDGC CSAVEDDSAA AAAASIAELI GGEAQYSPRP DYPDRLRSRS IDPAARAESV AWILKVQEYY GFLPLTAYLA
101: VNYMDRFLSL HRLPVEGTSR YDCFEPGTVG QMELLVLMAL NWRLRSVTPF TFVDFFACKV DPGGRHTRCL IARATQVILA AMHGNIIMHC LCLGLGAAGV
201: NLVLRCSACS SNLQCTNCGT ATDVEFLDHC PSSMAAAAVL CAIGETPSLE SVSPGAAVSW CIGLAEEGIS SCYRLMQRLV IGNVRTRVAS TTTITMAAVN
301: LCCSDEALSS HSSATSSPPP AKRRKRSPTA T
101: VNYMDRFLSL HRLPVEGTSR YDCFEPGTVG QMELLVLMAL NWRLRSVTPF TFVDFFACKV DPGGRHTRCL IARATQVILA AMHGNIIMHC LCLGLGAAGV
201: NLVLRCSACS SNLQCTNCGT ATDVEFLDHC PSSMAAAAVL CAIGETPSLE SVSPGAAVSW CIGLAEEGIS SCYRLMQRLV IGNVRTRVAS TTTITMAAVN
301: LCCSDEALSS HSSATSSPPP AKRRKRSPTA T
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.