CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06014
KRH11866
KRH17547
KRH36887
KRH37522
KRH42252
KRH47306
KRH48128
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	KRH06014	AT1G76540.1	12857813
AT1G70210.1	KRH17547	AT1G76540.1	12857813
AT1G70210.1	KRH37522	AT1G76540.1	12857813
AT1G70210.1	KRH48128	AT1G76540.1	12857813
AT1G70210.1	KRH11866	AT3G48750.1	12857813
AT1G70210.1	KRH36887	AT3G48750.1	12857813
AT1G70210.1	KRH42252	AT3G48750.1	12857813
AT1G70210.1	KRH58370	AT3G48750.1	12857813
AT1G70210.1	KRH47306	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69476	Soybean	nucleus	82.98	93.51
VIT_01s0026g00710.t01	Wine grape	nucleus	67.54	79.63
KRG99255	Soybean	nucleus	71.99	79.02
KRH45743	Soybean	nucleus	71.47	75.83
Solyc05g006050.2.1	Tomato	nucleus	59.69	67.66
PGSC0003DMT400040287	Potato	nucleus	59.16	67.26
AT1G70210.1	Thale cress	nucleus	54.71	61.65
CDY38800	Canola	nucleus	51.05	61.13
CDY11608	Canola	nucleus	50.52	60.88
Bra007901.1-P	Field mustard	nucleus	52.36	59.0
CDY67142	Canola	nucleus	52.36	59.0
CDY59943	Canola	nucleus	53.4	56.51
GSMUA_Achr3P06030_001	Banana	cytosol	39.53	51.01
GSMUA_Achr9P28180_001	Banana	nucleus	38.48	48.51
Os09t0382300-00	Rice	nucleus	39.01	48.38
TraesCS5A01G200500.2	Wheat	nucleus	40.05	47.22
TraesCS5B01G199100.1	Wheat	nucleus	39.53	47.19
OQU89443	Sorghum	nucleus	40.05	45.95
HORVU5Hr1G059770.2	Barley	nucleus	39.79	42.58
TraesCS5D01G206200.1	Wheat	nucleus	40.31	41.96
KRH35652	Soybean	nucleus	32.72	41.39
Os06t0236600-00	Rice	nucleus	38.22	40.22
Zm00001d020353_P001	Maize	nucleus	34.55	39.88
GSMUA_Achr7P19980_001	Banana	nucleus	40.58	39.85
KRG91131	Soybean	nucleus	33.77	39.81
KRH58137	Soybean	nucleus	30.89	37.11
KRH04404	Soybean	vacuole	31.68	35.59
KRH52917	Soybean	nucleus	32.2	34.94
KRH16827	Soybean	nucleus	31.94	34.37
KRH72435	Soybean	nucleus	31.94	34.17
KRH69654	Soybean	cytosol	21.73	34.16
KRH62196	Soybean	nucleus	31.41	34.09
KRH05626	Soybean	cytosol	18.59	33.02
KRH45568	Soybean	nucleus	29.32	32.37
KRG99448	Soybean	nucleus	29.84	31.84
KRH21593	Soybean	nucleus	22.51	31.62
KRH10729	Soybean	nucleus	22.25	31.25
KRH15412	Soybean	cytosol	21.73	30.74
KRH74510	Soybean	nucleus	28.53	30.19
KRH61407	Soybean	nucleus	24.35	29.81
KRH77118	Soybean	nucleus	25.65	29.52
KRH28363	Soybean	nucleus	25.39	29.31
KRH28424	Soybean	nucleus	25.65	29.25
KRH61348	Soybean	nucleus	26.7	29.23
KRH52092	Soybean	nucleus	23.82	28.98
KRH77050	Soybean	nucleus, plastid	24.87	28.44
KRH52038	Soybean	nucleus	26.7	28.18
KRH22479	Soybean	cytosol	23.04	27.85
KRH04529	Soybean	nucleus	26.96	27.76
KRH26876	Soybean	nucleus	22.51	27.3
KRH57973	Soybean	nucleus	26.7	26.63
KRH25470	Soybean	nucleus	22.25	26.23
KRG90996	Soybean	nucleus	26.96	26.21
KRH56054	Soybean	cytosol, nucleus, plasma membrane	22.51	26.14
KRH65892	Soybean	cytosol	19.37	25.69
KRH75669	Soybean	cytosol	19.11	25.26
KRH35760	Soybean	nucleus	26.44	25.12
KRH54628	Soybean	cytosol	9.69	24.18
KRH54622	Soybean	cytosol	9.69	24.18

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100780369	MapMan:13.1.1.1.4	EMBL:ACUP02000059	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_01G035600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:I1J5E0	EnsemblPlants:KRH74675	ProteinID:KRH74675	ProteinID:KRH74675.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00023BB2AF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:3717548..3720581

Molecular Weight (calculated)

42785.0 Da

IEP (calculated)

5.710

GRAVY (calculated)

-0.175

Length

382 amino acids

Sequence
(BLAST)

001: MKEATCIFHQ QLHSLFLHSS PQLTLPAKPP RKPWPENESP PIAMSVSCSN CFPDDDHSFL LCGEDSSGIM DSSPECSSDL DSSPPSEAES IAGFMEDERN
101: FVPGFEYLNR FQSRSLDASA REESVAWILK VQAYYAFQPV TAYLSVNYLD RFLNSRPLPP KTNGWPLQLL SVACLSLAAK MEESLVPSLL DLQVEGAKYV
201: FEPKTIRRME LLVLGVLDWR LRSVTPFSFL DFFACKLDST GTFTGFLISR ATQIILSNIQ EASFLAYWPS CIAAAAILHA ANEIPNWSLV RPEHAESWCE
301: GLRKEKIIGC YQLMQELVID NNQRKPPKVL PQLRVTISRP IMRSSVSSFL ASSSSPSSSS LSCRRRKLNN SLWVDDDKGN SQ

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.