CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93247
KRG94254
KRG94519
KRH06950
KRH11866
KRH25124
KRH30550
KRH36887
KRH42252
KRH49124
KRH56563
KRH57679
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	KRH25124	AT2G27960.1	20706207
AT5G02110.1	KRH30550	AT2G27960.1	20706207
AT5G02110.1	KRH25124	AT2G27970.1	20706207
AT5G02110.1	KRH30550	AT2G27970.1	20706207
AT5G02110.1	KRH11866	AT3G48750.1	20706207
AT5G02110.1	KRH36887	AT3G48750.1	20706207
AT5G02110.1	KRH42252	AT3G48750.1	20706207
AT5G02110.1	KRH58370	AT3G48750.1	20706207
AT5G02110.1	KRH49124	AT5G02220.1	20706207
AT5G02110.1	KRG94254	AT5G14170.1	20706207
AT5G02110.1	KRG94519	AT5G14170.1	20706207
AT5G02110.1	KRH06950	AT5G14170.1	20706207
AT5G02110.1	KRH57679	AT5G14170.1	20706207
AT5G02110.1	KRG93247	AT5G40460.1	20706207
AT5G02110.1	KRH56563	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54622	Soybean	cytosol	46.71	88.24
KRH54628	Soybean	cytosol	46.71	88.24
KRH65892	Soybean	cytosol	87.89	88.19
VIT_08s0007g00790.t01	Wine grape	nucleus	44.98	38.46
CDY10467	Canola	cytosol	36.33	30.97
CDY55121	Canola	cytosol	36.68	30.9
Bra005708.1-P	Field mustard	cytosol	35.99	30.32
Bra009612.1-P	Field mustard	cytosol	35.64	30.29
CDY40332	Canola	cytosol	35.64	30.29
GSMUA_Achr6P34040_001	Banana	nucleus	28.72	30.18
GSMUA_Achr10P...	Banana	cytosol	26.3	30.04
AT5G02110.1	Thale cress	cytosol	33.56	28.45
KRH69654	Soybean	cytosol	21.45	25.51
KRH10729	Soybean	nucleus	23.53	25.0
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	27.68	24.1
TraesCS4A01G177400.1	Wheat	cytosol	27.68	24.02
Os11t0706801-00	Rice	nucleus	26.3	23.75
KRH05626	Soybean	cytosol	17.65	23.72
KRH35652	Soybean	nucleus	24.22	23.18
KRH21593	Soybean	nucleus	21.8	23.16
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	26.64	22.85
CDX80803	Canola	cytosol	35.29	22.62
KRH61348	Soybean	nucleus	26.99	22.35
OQU84124	Sorghum	nucleus	32.53	22.01
KRH58137	Soybean	nucleus	24.22	22.01
KRH74510	Soybean	nucleus	27.34	21.88
KRG91131	Soybean	nucleus	24.22	21.6
KRH69476	Soybean	nucleus	24.91	21.24
Zm00001d048594_P001	Maize	cytosol	31.14	21.18
KRH45568	Soybean	nucleus	24.91	20.81
KRH26876	Soybean	nucleus	22.49	20.63
KRH22479	Soybean	cytosol	22.49	20.57
KRH72435	Soybean	nucleus	25.26	20.45
KRH52038	Soybean	nucleus	25.61	20.44
KRH28363	Soybean	nucleus	23.18	20.24
KRH61407	Soybean	nucleus	21.8	20.19
KRG99255	Soybean	nucleus	24.22	20.11
KRH52092	Soybean	nucleus	21.8	20.06
KRH16827	Soybean	nucleus	24.57	20.0
KRH15412	Soybean	cytosol	18.69	20.0
KRH04404	Soybean	vacuole	23.53	20.0
KRH45743	Soybean	nucleus	24.91	20.0
KRH77118	Soybean	nucleus	22.84	19.88
KRG99448	Soybean	nucleus	24.57	19.83
KRH28424	Soybean	nucleus	22.84	19.7
KRH74675	Soybean	nucleus, plastid	25.26	19.11
KRH04529	Soybean	nucleus	24.22	18.87
KRH77050	Soybean	nucleus, plastid	21.45	18.56
KRH25470	Soybean	nucleus	20.76	18.52
KRH62196	Soybean	nucleus	22.49	18.47
KRH52917	Soybean	nucleus	22.49	18.47
KRH56054	Soybean	cytosol, nucleus, plasma membrane	20.76	18.24
KRH57973	Soybean	nucleus	23.18	17.49
KRG90996	Soybean	nucleus	22.15	16.29
KRH35760	Soybean	nucleus	22.15	15.92

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100792420	MapMan:13.1.1.1.4	UniProt:A0A0R0LG53	EMBL:ACUP02000444	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_01G100000	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlants:KRH75669	ProteinID:KRH75669	ProteinID:KRH75669.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF215	SMART:SM00385	SUPFAM:SSF47954
UniParc:UPI00023379DB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:33324860..33327018

Molecular Weight (calculated)

33657.8 Da

IEP (calculated)

4.732

GRAVY (calculated)

0.084

Length

289 amino acids

Sequence
(BLAST)

001: MDNLLCDEVW LSKSANTFEE VISDPVALKS YENEEFEEAF AVCLEKEVLC LPEPDYTKYL HSNNLIFPRC RVIQWFIKCR RRFNLSFGTV FLAFNYLDRF
101: VSICQCNDWE YWMLELLSIA CLSIAIKFNE ISGLSLHEIQ VEGLDYSFQS NVILKMELIL LKALGWRLNS MTSFSFAEML GFDFLEPHHH VKLISRVTDL
201: LVQATLDQKM MEFRPSVVGM SALWCTLDQL FPPTSDTYIA YIMSILNQSQ KDDIIKCHKL METQTSMCVE NHHYYCPLSP TTVLLNTHD

Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)

001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I

Arabidopsis Description

CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.