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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra006242.1-P
Bra009606.1-P
Bra018036.1-P
Bra025573.1-P
Bra028880.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G02110.1 Bra034380.1-P AT2G27970.1 20706207
AT5G02110.1 Bra018036.1-P AT3G48750.1 20706207
AT5G02110.1 Bra029917.1-P AT3G48750.1 20706207
AT5G02110.1 Bra009606.1-P AT5G02220.1 20706207
AT5G02110.1 Bra028880.1-P AT5G02220.1 20706207
AT5G02110.1 Bra006242.1-P AT5G14170.1 20706207
AT5G02110.1 Bra025573.1-P AT5G40460.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY40332 Canola cytosol 99.12 99.12
Bra005708.1-P Field mustard cytosol 77.35 76.68
AT5G02110.1 Thale cress cytosol 63.53 63.34
KRH75669 Soybean cytosol 30.29 35.64
KRH65892 Soybean cytosol 29.71 35.07
KRH54628 Soybean cytosol 15.29 33.99
KRH54622 Soybean cytosol 15.29 33.99
VIT_08s0007g00790.t01 Wine grape nucleus 32.06 32.25
GSMUA_Achr10P... Banana cytosol 22.06 29.64
GSMUA_Achr6P34040_001 Banana nucleus 22.35 27.64
Os11t0706801-00 Rice nucleus 23.82 25.31
TraesCS4A01G177400.1 Wheat cytosol 24.12 24.62
TraesCS4B01G140400.1 Wheat cytosol, nucleus, plastid 23.53 24.1
Bra007901.1-P Field mustard nucleus 23.82 23.89
TraesCS4D01G135100.1 Wheat cytosol, nucleus, plastid 23.24 23.44
Bra038518.1-P Field mustard nucleus 19.12 22.41
Bra024383.1-P Field mustard nucleus 20.29 22.4
Bra037817.1-P Field mustard nucleus 18.24 21.99
Bra009031.1-P Field mustard nucleus 18.53 21.21
Bra036051.1-P Field mustard nucleus 21.76 20.96
Bra012909.1-P Field mustard nucleus 20.0 20.73
Bra029992.1-P Field mustard nucleus 21.18 20.45
Bra030232.1-P Field mustard nucleus 21.18 20.28
Zm00001d048594_P001 Maize cytosol 25.29 20.24
OQU84124 Sorghum nucleus 25.29 20.14
Bra012146.1-P Field mustard nucleus 20.59 19.77
Bra031858.1-P Field mustard nucleus 17.35 19.73
Bra034612.1-P Field mustard nucleus 20.88 19.29
Bra017629.1-P Field mustard nucleus 20.59 19.02
Bra011501.1-P Field mustard nucleus 20.59 18.77
Bra034198.1-P Field mustard nucleus 16.18 18.46
Bra017840.1-P Field mustard nucleus 16.47 16.42
Protein Annotations
EnsemblPlants:Bra009612.1EnsemblPlants:Bra009612.1-PEnsemblPlantsGene:Bra009612Gene3D:1.10.472.10InterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_NPANTHER:PTHR10177PANTHER:PTHR10177:SF215PFAM:PF00134PIRSF:PIRSF001771SEG:seg
SMART:SM00385SUPFAM:SSF47954UniParc:UPI0002547E09UniProt:M4CZG5MapMan:13.1.1.1.4:
Description
AT5G02110 (E=1e-107) CYCD7;1, CYCD7 | CYCD7;1 (CYCLIN D7;1); cyclin-dependent protein kinase
Coordinates
chrA10:-:17433916..17435458
Molecular Weight (calculated)
38588.2 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.156
Length
340 amino acids
Sequence
(BLAST)
001: MDNLLCDESW LSDPSTPEPF PNFRLNIHDD HVEMSPAMDA ATVEEAISID LEKESCFSNH GDKFIEFLVS KKLTDARSQT VQWLIQTRNR LNLSFETIFS
101: AASCFDRFVY ATICNEWSKW MVELVAVTSL SIASKFNEVS SPSLEDFQME GLNHMFHHKT VLEMELIVLK ALEWRVNWVT SFSFSQILVT TIGMGGGDIM
201: MNRITDHLLD DLCDLKMLAY APSVVAVAVV LGFLEEKAAL EEKLGKIMNL FGEEHKVSVA KCINVMKSRN VEEGWRREVK SPASVLQRGE VMNMNIVYYV
301: ENLSAIFQIL RSGGSDKKRE RDSHEDENRP GKRGTIVTSN
Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)
001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
Arabidopsis Description
CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.