Factsheet for Bra028880.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007982.1-P
Bra007983.1-P
Bra011899.1-P
Bra016143.1-P
Bra018036.1-P
Bra029917.1-P
Bra033563.1-P
Bra037093.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02220.1	Bra037093.1-P	AT1G56000.1	20706207
AT5G02220.1	Bra007982.1-P	AT1G71380.1	20706207
AT5G02220.1	Bra007983.1-P	AT1G71380.1	20706207
AT5G02220.1	Bra016143.1-P	AT1G71380.1	20706207
AT5G02220.1	Bra011899.1-P	AT3G45970.1	20706207
AT5G02220.1	Bra033563.1-P	AT3G45970.1	20706207
AT5G02220.1	Bra018036.1-P	AT3G48750.1	20706207
AT5G02220.1	Bra029917.1-P	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04845	Canola	nucleus	98.63	98.63
AT5G02220.1	Thale cress	cytosol, nucleus, plastid	67.12	68.06
Bra009606.1-P	Field mustard	nucleus	67.12	67.12
KRH49124	Soybean	cytosol, nucleus, plastid	46.58	52.31
GSMUA_Achr6P17910_001	Banana	nucleus	50.68	48.05
TraesCS5B01G495400.1	Wheat	nucleus	46.58	40.96
TraesCS5D01G495900.1	Wheat	cytosol	47.95	39.33
TraesCS5A01G482300.1	Wheat	nucleus	47.95	39.33
Os03t0822400-01	Rice	nucleus	46.58	38.2
GSMUA_Achr2P16400_001	Banana	cytosol	45.21	37.93
HORVU3Hr1G086110.1	Barley	cytosol	41.1	37.5
TraesCS3B01G393400.1	Wheat	cytosol	41.1	36.59
Bra015583.1-P	Field mustard	cytosol	42.47	36.47
TraesCS3D01G354800.1	Wheat	cytosol	41.1	36.14
TraesCS3A01G361000.1	Wheat	cytosol	39.73	35.8
EER93180	Sorghum	cytosol	43.84	34.41
Zm00001d042902_P001	Maize	cytosol	41.1	33.33
Os01t0843700-01	Rice	cytosol	42.47	33.33
Bra030687.1-P	Field mustard	cytosol	38.36	32.94
Zm00001d012956_P001	Maize	cytosol	41.1	31.58
HORVU5Hr1G113790.1	Barley	cytosol, nucleus	46.58	30.91
HORVU5Hr1G113780.1	Barley	cytosol, nucleus	46.58	30.09
KXG33680	Sorghum	mitochondrion	41.1	24.79

Protein Annotations

EnsemblPlants:Bra028880.1	EnsemblPlants:Bra028880.1-P	EnsemblPlantsGene:Bra028880	PANTHER:PTHR33142	PANTHER:PTHR33142:SF15	SEG:seg
UniParc:UPI000254363B	UniProt:M4EJB4	MapMan:13.1.1.3.2	:	:	:

Description

AT5G02220 (E=5e-011) | unknown protein

Coordinates

chrA02:-:1612401..1612622

Molecular Weight (calculated)

8401.9 Da

IEP (calculated)

7.927

GRAVY (calculated)

-1.064

Length

73 amino acids

Sequence
(BLAST)

1: MDSKRDLHES IEEDECTTPR SGEYRIPVSS VCPPPPRKKS KVVRNRDPPR NGYFQPPDLE ALFCAQLRRE ACT

Best Arabidopsis Sequence Match ( AT5G02220.1 )
(BLAST)

1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA

Arabidopsis Description

SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.