Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G086110.1 | Barley | cytosol | 66.67 | 77.5 |
| Zm00001d042902_P001 | Maize | cytosol | 74.19 | 76.67 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 67.74 | 75.9 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 66.67 | 75.61 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 63.44 | 72.84 |
| KXG33680 | Sorghum | mitochondrion | 80.65 | 61.98 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 46.24 | 55.84 |
| Os03t0822400-01 | Rice | nucleus | 51.61 | 53.93 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 48.39 | 51.72 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 37.63 | 50.0 |
| KRH73050 | Soybean | cytosol | 36.56 | 48.57 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 32.26 | 46.15 |
| KRH15086 | Soybean | cytosol | 33.33 | 45.59 |
| Bra009606.1-P | Field mustard | nucleus | 35.48 | 45.21 |
| CDY10460 | Canola | nucleus | 35.48 | 45.21 |
| CDY40340 | Canola | nucleus | 35.48 | 45.21 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 34.41 | 44.44 |
| Bra028880.1-P | Field mustard | nucleus | 33.33 | 42.47 |
| CDY04845 | Canola | nucleus | 33.33 | 42.47 |
| CDY71405 | Canola | cytosol | 38.71 | 42.35 |
| Bra015583.1-P | Field mustard | cytosol | 38.71 | 42.35 |
| CDY10280 | Canola | cytosol | 37.63 | 41.18 |
| CDY06711 | Canola | cytosol | 37.63 | 41.18 |
| CDY48103 | Canola | nucleus | 32.26 | 39.47 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 30.11 | 37.84 |
| AT1G07500.1 | Thale cress | cytosol | 33.33 | 37.8 |
| Bra030687.1-P | Field mustard | cytosol | 34.41 | 37.65 |
| CDY15615 | Canola | cytosol | 34.41 | 37.65 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 31.18 | 34.94 |
| CDX86476 | Canola | cytosol | 29.03 | 34.62 |
| PGSC0003DMT400077975 | Potato | cytosol | 31.18 | 34.12 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 26.88 | 33.78 |
Protein Annotations
| EnsemblPlants:Os01t0843700-01 | EnsemblPlantsGene:Os01g0843700 | EntrezGene:9270895 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33142 | PANTHER:PTHR33142:SF16 | ProteinID:BAH91376.1 | ProteinID:BAS75180.1 | ProteinID:EAZ14125.1 | RefSeq:XP_015645240.1 |
| SEG:seg | UniParc:UPI0000F170F1 | UniProt:A2ZZH8 | MapMan:13.1.1.3.2 | : | : |
Description
Conserved hypothetical protein. (Os01t0843700-01)
Coordinates
chr1:+:36232930..36233540
Molecular Weight (calculated)
9418.1 Da
IEP (calculated)
9.039
GRAVY (calculated)
-0.310
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MESKAEALAA AAAAAAAAAS AASTGGGHAC GGWETPKREE CRIPATLPCP AAPRKAVPDF GKRRGPPKNG YFQPPDLEAL FALAPRRQAS SCA
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.