Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G086110.1 | Barley | cytosol | 87.8 | 90.0 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 87.8 | 88.89 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 89.02 | 87.95 |
| Os01t0843700-01 | Rice | cytosol | 75.61 | 66.67 |
| Zm00001d042902_P001 | Maize | cytosol | 71.95 | 65.56 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 50.0 | 53.25 |
| KXG33680 | Sorghum | mitochondrion | 76.83 | 52.07 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 40.24 | 47.14 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 47.56 | 46.99 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 48.78 | 45.98 |
| KRH73050 | Soybean | cytosol | 39.02 | 45.71 |
| KRH15086 | Soybean | cytosol | 37.8 | 45.59 |
| CDY10460 | Canola | nucleus | 39.02 | 43.84 |
| Bra009606.1-P | Field mustard | nucleus | 39.02 | 43.84 |
| CDY40340 | Canola | nucleus | 39.02 | 43.84 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 37.8 | 43.06 |
| Bra015583.1-P | Field mustard | cytosol | 43.9 | 42.35 |
| CDY71405 | Canola | cytosol | 43.9 | 42.35 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 32.93 | 41.54 |
| CDY10280 | Canola | cytosol | 42.68 | 41.18 |
| CDY06711 | Canola | cytosol | 42.68 | 41.18 |
| Bra028880.1-P | Field mustard | nucleus | 36.59 | 41.1 |
| CDY04845 | Canola | nucleus | 36.59 | 41.1 |
| CDY48103 | Canola | nucleus | 36.59 | 39.47 |
| Bra030687.1-P | Field mustard | cytosol | 40.24 | 38.82 |
| CDY15615 | Canola | cytosol | 40.24 | 38.82 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 34.15 | 37.84 |
| AT1G07500.1 | Thale cress | cytosol | 36.59 | 36.59 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 36.59 | 36.14 |
| PGSC0003DMT400077975 | Potato | cytosol | 36.59 | 35.29 |
| CDX86476 | Canola | cytosol | 32.93 | 34.62 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 29.27 | 32.43 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G393400.1 | EnsemblPlantsGene:TraesCS3B01G393400 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF16 | SEG:seg | MapMan:13.1.1.3.2 |
Description
No Description!
Coordinates
chr3B:+:618861494..618861742
Molecular Weight (calculated)
8626.2 Da
IEP (calculated)
8.322
GRAVY (calculated)
-0.429
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MAMESGAEAA AAAAGYYGGT CGWETPKREE CRIPATLPCP AAPRKAAADF GTPRRPPKNG YFQPPDLEAL FALAPRRQAS CA
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.