Factsheet for TraesCS4B01G327100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G499100.1	Wheat	extracellular	79.34	86.0
TraesCS4B01G327200.1	Wheat	extracellular	83.39	84.33
TraesCS4D01G323800.2	Wheat	extracellular	90.04	80.79
HORVU4Hr1G081800.6	Barley	extracellular, golgi, plastid	83.76	75.92
TraesCS4B01G326900.1	Wheat	extracellular	76.75	75.64
EER95568	Sorghum	extracellular	69.37	69.63
Os03t0132200-01	Rice	extracellular, plastid	70.11	68.1
Zm00001d048344_P002	Maize	extracellular	68.27	67.52
Zm00001d027520_P001	Maize	extracellular	69.0	67.27
TraesCS1B01G217200.1	Wheat	extracellular	63.1	62.18
GSMUA_Achr11P...	Banana	extracellular	56.09	57.14
GSMUA_Achr5P11590_001	Banana	extracellular	54.98	57.09
GSMUA_Achr5P19030_001	Banana	extracellular	54.98	56.44
Solyc01g112000.2.1	Tomato	extracellular	52.77	54.79
PGSC0003DMT400047948	Potato	extracellular	52.4	54.62
VIT_03s0038g03430.t01	Wine grape	extracellular	52.03	54.44
GSMUA_AchrUn_...	Banana	extracellular	37.27	53.72
GSMUA_Achr11P...	Banana	extracellular	52.03	53.21
KRH29091	Soybean	extracellular	49.45	51.74
KRH24119	Soybean	extracellular	48.71	50.57
AT3G45970.1	Thale cress	extracellular	48.71	49.81
AT4G38400.1	Thale cress	extracellular	48.71	49.81
CDY69288	Canola	extracellular	48.34	49.62
Bra033563.1-P	Field mustard	extracellular	48.34	49.62
CDY64278	Canola	extracellular	47.97	49.06
Bra011899.1-P	Field mustard	extracellular	48.34	48.7
CDY61895	Canola	extracellular	48.34	48.7
CDY72634	Canola	extracellular	47.6	48.68
CDY52801	Canola	extracellular	47.97	48.33
AT3G45960.2	Thale cress	extracellular	46.86	48.29
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	54.61	48.21
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	41.33	35.44
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	40.96	34.8
TraesCS2B01G122100.1	Wheat	extracellular	22.88	32.46
TraesCS2B01G095700.1	Wheat	extracellular	29.15	31.35
TraesCS2B01G607400.1	Wheat	extracellular	28.78	31.33
TraesCS2B01G432300.1	Wheat	plastid	29.52	30.53
TraesCS2B01G095600.1	Wheat	extracellular	28.04	29.8
TraesCS2B01G432100.1	Wheat	extracellular	26.94	27.97
TraesCS2B01G432200.1	Wheat	extracellular, plastid	28.04	27.05
TraesCS6B01G264400.1	Wheat	extracellular	26.2	26.49
TraesCS6B01G275800.1	Wheat	extracellular	28.04	26.48
TraesCS3B01G535800.1	Wheat	extracellular	28.04	26.3
TraesCS2B01G480700.1	Wheat	extracellular	25.09	25.66
TraesCS6B01G275700.1	Wheat	extracellular	27.31	25.61
TraesCS1B01G226000.2	Wheat	extracellular	25.46	25.56
TraesCS1B01G222300.1	Wheat	extracellular	24.35	24.91
TraesCS1B01G225900.1	Wheat	extracellular, mitochondrion, plastid	27.31	24.83
TraesCS3B01G014300.1	Wheat	extracellular, nucleus	25.09	24.82
TraesCS3B01G526800.1	Wheat	extracellular	27.31	24.67
TraesCS6B01G245700.1	Wheat	extracellular	26.94	24.66
TraesCS3B01G524500.1	Wheat	extracellular	28.04	24.44
TraesCS4B01G362100.1	Wheat	extracellular	23.99	24.07
TraesCS2B01G390000.1	Wheat	extracellular	24.72	23.84
TraesCS6B01G046000.1	Wheat	extracellular	23.99	23.81
TraesCS6B01G046100.1	Wheat	extracellular	23.99	23.81
TraesCS6B01G046200.1	Wheat	extracellular	23.99	23.81
TraesCS4B01G362600.1	Wheat	extracellular, unclear	23.62	23.7
TraesCS4B01G362500.1	Wheat	extracellular	23.62	23.7
TraesCS6B01G046300.1	Wheat	extracellular	23.62	23.44
TraesCS5B01G376500.1	Wheat	extracellular	26.57	23.3
TraesCS1B01G225800.1	Wheat	extracellular	23.25	23.25
TraesCS6B01G046400.1	Wheat	extracellular	23.25	23.08
TraesCS4B01G375200.1	Wheat	extracellular	24.35	22.6
TraesCS3B01G014400.1	Wheat	cytosol	20.3	22.18
TraesCS1B01G226100.1	Wheat	extracellular	25.46	22.12
TraesCS1B01G225700.1	Wheat	extracellular	24.35	21.85
TraesCS5B01G079400.1	Wheat	extracellular, plasma membrane	26.57	21.11
TraesCS4B01G375600.1	Wheat	extracellular	26.2	20.82
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	42.44	17.86

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.2	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31692	PANTHER:PTHR31692:SF4	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4B01G327100	EnsemblPlants:TraesCS4B01G327100.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:618074560..618075867

Molecular Weight (calculated)

28687.0 Da

IEP (calculated)

6.013

GRAVY (calculated)

-0.023

Length

271 amino acids

Sequence
(BLAST)

001: MAVSRCSILV LPLLFLSTFP PPASACDRCV HRTRAANYAP SLTLAAGSCG YGAAAASLNG DLLAGAGPAL YRQGVGCGAC FQVRCKDEEL CSTAGVKVVV
101: TDRASTKTND TDLVLSSPAF AAMARPGMAG RLAKLGAVDV EYKRVPCVYE GKNLSLRVEE RSRAPSELAV TILYQGGQTD IVEVDVTQVG SPSSWTSLTH
201: DHGPAWSTRL APPGPLQLRA VVTGGYDGAW VYAEHEVLPR QWHAGEVYDT GVQITDIAQE ACSPCDTQEW K

Best Arabidopsis Sequence Match ( AT3G45960.1 )
(BLAST)

001: MATSFFAGHI AAAIPSIYKD GAGCGACFQV RCKNPKLCNS KGTIVMVTDL NTSNQTDLVL SSRAFRAMAK PVVGVDKYLL KQGIVDVEYQ RVPCNYGKRN
101: LNVRVEEASK KPNYLAIKLL YQGGQTEVVG IDIAPVGSSQ WSYMSRSHGA VWATDKVPTG ALQFKFTVTG GYDGKTVWSK RVLPANWNSG RIYDAGVQIT
201: DIAQEGCDTC GHIWN

Arabidopsis Description

EXLA3Expansin-like A3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZT5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.