Factsheet for PGSC0003DMT400047948

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g112000.2.1	Tomato	extracellular	94.62	94.25
KRH29091	Soybean	extracellular	71.92	72.2
KRH24119	Soybean	extracellular	71.92	71.65
VIT_03s0038g03430.t01	Wine grape	extracellular	68.85	69.11
AT3G45970.1	Thale cress	extracellular	65.38	64.15
CDY61895	Canola	extracellular	65.77	63.57
Bra011899.1-P	Field mustard	extracellular	65.77	63.57
CDY52801	Canola	extracellular	65.38	63.2
CDY69288	Canola	extracellular	63.46	62.5
Bra033563.1-P	Field mustard	extracellular	63.46	62.5
AT4G38400.1	Thale cress	extracellular	62.69	61.51
AT3G45960.2	Thale cress	extracellular	61.92	61.22
CDY64278	Canola	extracellular	61.92	60.75
GSMUA_Achr11P...	Banana	extracellular	61.92	60.53
CDY72634	Canola	extracellular	61.54	60.38
GSMUA_Achr5P19030_001	Banana	extracellular	60.0	59.09
GSMUA_Achr5P11590_001	Banana	extracellular	57.69	57.47
TraesCS4B01G326900.1	Wheat	extracellular	60.0	56.73
GSMUA_Achr11P...	Banana	extracellular	57.69	56.6
TraesCS5A01G498900.1	Wheat	extracellular	59.62	56.36
TraesCS4D01G324000.1	Wheat	extracellular	58.46	55.68
TraesCS4B01G327200.1	Wheat	extracellular	57.31	55.6
TraesCS4D01G323600.1	Wheat	extracellular	59.23	55.6
EER95568	Sorghum	extracellular	57.69	55.56
HORVU4Hr1G081990.2	Barley	extracellular	59.23	55.0
TraesCS5A01G499300.1	Wheat	nucleus	57.31	54.58
TraesCS5A01G499100.1	Wheat	extracellular	52.31	54.4
TraesCS4D01G323900.1	Wheat	golgi	56.15	53.87
Os03t0132200-01	Rice	extracellular, plastid	57.69	53.76
Zm00001d027520_P001	Maize	extracellular	56.92	53.24
Os10t0542400-01	Rice	extracellular	56.15	53.09
TraesCS4B01G327100.1	Wheat	golgi	54.62	52.4
Zm00001d048344_P002	Maize	extracellular	55.0	52.19
TraesCS1B01G217200.1	Wheat	extracellular	54.62	51.64
Zm00001d029783_P003	Maize	extracellular	54.23	51.27
TraesCS5A01G499200.1	Wheat	extracellular	51.54	50.95
KXG38992	Sorghum	extracellular	55.0	50.71
HORVU1Hr1G052290.4	Barley	extracellular	53.85	50.54
GSMUA_AchrUn_...	Banana	extracellular	36.54	50.53
TraesCS1A01G203200.1	Wheat	extracellular	54.62	50.35
HORVU4Hr1G081800.6	Barley	extracellular, golgi, plastid	57.69	50.17
TraesCS1D01G206700.1	Wheat	extracellular	53.85	49.47
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	58.08	49.19
TraesCS4D01G323800.2	Wheat	extracellular	55.38	47.68
EER99370	Sorghum	extracellular	49.62	47.08
Os07t0475400-01	Rice	extracellular	48.46	45.65
Zm00001d006360_P001	Maize	extracellular	46.92	44.85
PGSC0003DMT400068379	Potato	mitochondrion	36.54	42.22
PGSC0003DMT400052810	Potato	extracellular	36.92	37.94
PGSC0003DMT400004660	Potato	extracellular	36.15	36.86
PGSC0003DMT400067459	Potato	extracellular	35.38	36.65
PGSC0003DMT400067456	Potato	extracellular	35.0	35.97
PGSC0003DMT400067458	Potato	extracellular	34.23	35.46
HORVU7Hr1G119340.3	Barley	extracellular, golgi, plastid	41.54	34.95
TraesCS7D01G532200.1	Wheat	extracellular	40.77	34.3
TraesCS7A01G545900.1	Wheat	extracellular	40.38	33.98
TraesCS7A01G545800.1	Wheat	extracellular	39.23	33.89
TraesCSU01G099200.1	Wheat	endoplasmic reticulum, extracellular	40.0	33.77
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	40.38	33.23
HORVU7Hr1G119200.1	Barley	golgi, plastid, vacuole	40.38	33.23
Os06t0725300-01	Rice	endoplasmic reticulum	39.62	32.91
TraesCS7D01G532400.1	Wheat	extracellular	38.46	32.47
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	39.62	32.29
HORVU7Hr1G119220.1	Barley	extracellular, golgi, plastid	38.85	32.27
TraesCS7A01G546300.1	Wheat	endoplasmic reticulum, extracellular	39.62	32.09
TraesCS7D01G532500.1	Wheat	extracellular	39.62	32.09
TraesCS7A01G546000.1	Wheat	endoplasmic reticulum, extracellular	39.62	31.89
TraesCSU01G099100.1	Wheat	extracellular, golgi	38.08	31.73
Zm00001d014826_P001	Maize	endoplasmic reticulum, extracellular, vacuole	37.69	30.72
PGSC0003DMT400030395	Potato	cytosol, extracellular, mitochondrion, nucleus	15.0	30.0
PGSC0003DMT400048506	Potato	plastid	19.62	26.29
PGSC0003DMT400047177	Potato	extracellular	25.38	24.72
PGSC0003DMT400055827	Potato	extracellular	24.62	24.43
PGSC0003DMT400095086	Potato	plastid	22.69	23.6
KXG20919	Sorghum	plastid	40.0	23.48
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	41.54	16.77
PGSC0003DMT400066943	Potato	cytosol, plastid, vacuole	25.77	14.6

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.2	ProteinID:ABC47126	ProteinID:ABC47126.1	EMBL:DQ314757
InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	UniProt:M1BLN9	PFAM:PF01357
PFAM:PF03330	EnsemblPlantsGene:PGSC0003DMG400018635	PGSC:PGSC0003DMG400018635	EnsemblPlants:PGSC0003DMT400047948	PRINTS:PR01225	PFscan:PS50842
PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF4	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837
SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI000296B3D4	SEG:seg	:

Description

Expansin [Source:PGSC_GENE;Acc:PGSC0003DMG400018635]

Coordinates

chr1:-:87935729..87937391

Molecular Weight (calculated)

28247.8 Da

IEP (calculated)

8.242

GRAVY (calculated)

0.067

Length

260 amino acids

Sequence
(BLAST)

001: MSLFFLVFLL FVSSVIACDR CVHQSKVAYF SSASALLSGA CGYGNLAIGF NGGRLAAAVP KLYNNGAGCG ACYQIRCKDP KICSKHGTTV MVTDLNTNNQ
101: TDFVISSRAF MAMAIEGKAK DVLKLGIADV EYKRVPCDYK GKNLAVRVDE SSQKPYYLAI SIFYQGGQTE IVSVDVAQVG SSNWNFLTRN HGAIWDTSRV
201: PSGALQFRFV VTAGYDGKWI WAKSVLPSDW KMGVIYDTGV QITDIAQEGC SPCDDGSWKT

Best Arabidopsis Sequence Match ( AT3G45970.1 )
(BLAST)

001: MGSFLFLIVV IFLFSSSVNA CDRCLHRSKA AYFSSASALS SGACAYGSMA TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCSTKG TIVMITDLNK
101: SNQTDLVLSS RAFRAMAKPI VGADKDLLKQ GIVDIEYQRV PCDYGNKNMN VRVEEASKKP NYLEIKLLYQ GGQTEVVSID IAQVGSSPNW GYMTRSHGAV
201: WVTDKVPTGA IQFRFVVTGG YDGKMIWSQS VLPSNWEAGK IYDAGVQITD IAQEGCDPCD AHIWN

Arabidopsis Description

EXLA1Expansin-like A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZT4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.