Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G324000.1 | Wheat | extracellular | 95.24 | 95.24 |
| TraesCS4B01G327200.1 | Wheat | extracellular | 93.41 | 95.15 |
| TraesCS5A01G499200.1 | Wheat | extracellular | 82.05 | 85.17 |
| HORVU4Hr1G081800.6 | Barley | extracellular, golgi, plastid | 89.38 | 81.61 |
| TraesCS5A01G498900.1 | Wheat | extracellular | 81.69 | 81.09 |
| TraesCS5A01G499100.1 | Wheat | extracellular | 72.89 | 79.6 |
| EER95568 | Sorghum | extracellular | 76.19 | 77.04 |
| Zm00001d027520_P001 | Maize | extracellular | 75.09 | 73.74 |
| Os03t0132200-01 | Rice | extracellular, plastid | 74.73 | 73.12 |
| Zm00001d048344_P002 | Maize | extracellular | 72.89 | 72.63 |
| TraesCS1A01G203200.1 | Wheat | extracellular | 65.2 | 63.12 |
| GSMUA_Achr11P... | Banana | extracellular | 60.07 | 61.65 |
| GSMUA_Achr5P11590_001 | Banana | extracellular | 57.51 | 60.15 |
| GSMUA_Achr5P19030_001 | Banana | extracellular | 57.51 | 59.47 |
| Solyc01g112000.2.1 | Tomato | extracellular | 54.95 | 57.47 |
| GSMUA_AchrUn_... | Banana | extracellular | 39.56 | 57.45 |
| GSMUA_Achr11P... | Banana | extracellular | 55.68 | 57.36 |
| PGSC0003DMT400047948 | Potato | extracellular | 54.58 | 57.31 |
| VIT_03s0038g03430.t01 | Wine grape | extracellular | 53.11 | 55.98 |
| KRH29091 | Soybean | extracellular | 52.01 | 54.83 |
| KRH24119 | Soybean | extracellular | 52.01 | 54.41 |
| CDY69288 | Canola | extracellular | 51.28 | 53.03 |
| Bra033563.1-P | Field mustard | extracellular | 51.28 | 53.03 |
| AT3G45970.1 | Thale cress | extracellular | 51.28 | 52.83 |
| AT4G38400.1 | Thale cress | extracellular | 51.28 | 52.83 |
| Bra011899.1-P | Field mustard | extracellular | 51.65 | 52.42 |
| CDY61895 | Canola | extracellular | 51.65 | 52.42 |
| CDY64278 | Canola | extracellular | 50.55 | 52.08 |
| CDY52801 | Canola | extracellular | 51.28 | 52.04 |
| AT3G45960.2 | Thale cress | extracellular | 49.82 | 51.71 |
| CDY72634 | Canola | extracellular | 50.18 | 51.7 |
| GSMUA_Achr1P02170_001 | Banana | extracellular, peroxisome, plastid | 56.78 | 50.49 |
| TraesCS7A01G545800.1 | Wheat | extracellular | 43.22 | 39.2 |
| TraesCS7A01G545900.1 | Wheat | extracellular | 44.32 | 39.16 |
| TraesCS7A01G546000.1 | Wheat | endoplasmic reticulum, extracellular | 43.59 | 36.84 |
| TraesCS7A01G546300.1 | Wheat | endoplasmic reticulum, extracellular | 42.86 | 36.45 |
| TraesCS2A01G580300.1 | Wheat | extracellular | 29.3 | 32.13 |
| TraesCS2A01G105200.1 | Wheat | extracellular | 29.67 | 31.89 |
| TraesCS5A01G537300.1 | Wheat | cytosol, extracellular, plastid | 18.68 | 31.68 |
| TraesCS2A01G580200.1 | Wheat | extracellular | 28.57 | 31.08 |
| TraesCS2A01G413600.1 | Wheat | extracellular | 29.67 | 30.92 |
| TraesCS2A01G081200.1 | Wheat | extracellular | 27.84 | 29.92 |
| TraesCS2A01G080800.1 | Wheat | extracellular | 27.47 | 29.53 |
| TraesCS2A01G413400.1 | Wheat | extracellular | 28.21 | 29.5 |
| TraesCS6A01G249700.1 | Wheat | extracellular | 28.57 | 29.32 |
| TraesCS6A01G249400.2 | Wheat | extracellular | 28.21 | 29.06 |
| TraesCS6A01G249200.1 | Wheat | extracellular | 28.94 | 27.53 |
| TraesCS2A01G413500.1 | Wheat | extracellular, plastid | 28.21 | 27.4 |
| TraesCS1A01G212400.1 | Wheat | extracellular | 26.37 | 27.17 |
| TraesCS6A01G235800.1 | Wheat | extracellular | 26.37 | 26.97 |
| TraesCS1A01G208200.1 | Wheat | extracellular | 25.64 | 26.42 |
| TraesCS3A01G011200.1 | Wheat | cytosol | 15.38 | 26.25 |
| TraesCS2A01G458900.1 | Wheat | extracellular | 25.27 | 26.04 |
| TraesCS1A01G212300.1 | Wheat | extracellular | 26.01 | 25.91 |
| TraesCS6A01G249300.1 | Wheat | extracellular | 27.11 | 25.61 |
| TraesCS1A01G212600.1 | Wheat | extracellular | 26.01 | 25.54 |
| TraesCS3A01G488000.1 | Wheat | extracellular | 26.74 | 25.26 |
| TraesCS1A01G212000.1 | Wheat | extracellular | 24.91 | 25.19 |
| TraesCS2A01G373000.1 | Wheat | extracellular | 25.27 | 24.56 |
| TraesCS6A01G032700.1 | Wheat | extracellular | 24.54 | 24.54 |
| TraesCS3A01G011100.1 | Wheat | extracellular | 24.54 | 24.45 |
| TraesCS5A01G538000.1 | Wheat | extracellular | 25.27 | 24.3 |
| TraesCS6A01G217100.1 | Wheat | extracellular | 26.37 | 24.24 |
| TraesCS3A01G479900.1 | Wheat | extracellular | 28.21 | 24.14 |
| TraesCS1A01G212200.1 | Wheat | extracellular | 23.81 | 23.99 |
| TraesCS5A01G530700.1 | Wheat | extracellular | 23.44 | 23.7 |
| TraesCS5A01G530100.1 | Wheat | extracellular | 23.44 | 23.7 |
| TraesCS3A01G480000.1 | Wheat | extracellular | 27.47 | 23.36 |
| TraesCS5A01G073100.1 | Wheat | extracellular, plasma membrane | 24.91 | 19.88 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.2 | InterPro:Expan_Lol_pI | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD |
| InterPro:Expansin_CBD_sf | GO:GO:0005575 | GO:GO:0005576 | InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 |
| InterPro:IPR036908 | PFAM:PF01357 | PFAM:PF03330 | PRINTS:PR01225 | PFscan:PS50842 | PFscan:PS50843 |
| PANTHER:PTHR31692 | PANTHER:PTHR31692:SF4 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SMART:SM00837 | SUPFAM:SSF49590 |
| SUPFAM:SSF50685 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS5A01G499300 | EnsemblPlants:TraesCS5A01G499300.1 | SEG:seg |
Description
No Description!
Coordinates
chr5A:+:666038985..666040123
Molecular Weight (calculated)
28876.6 Da
IEP (calculated)
8.481
GRAVY (calculated)
0.025
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVSSSSILL LPLLLLLLCS LPSLASACDR CAHRSRAAFY TSSLTLAAGS CGYGAAAASL NGGLLAAAGP ALYRQGVGCG ACFQVRCKDG ELCGTAGVRV
101: VVTDRARTKE NGTDLVLSSP AFAAMARPGM AGRLAKLGAV DVEYKRVPCE YKGKNLSLRV EQRSRAPSEL AVTILYQGGQ TDIVAVDVAQ VGASSSWRSL
201: TRDHGPAWST SLAPPGPLRL RAVVTGGYDG KWVWADREVL PRHWRAGEVY DTGVQITDIA QEACFPCDTQ ERR
101: VVTDRARTKE NGTDLVLSSP AFAAMARPGM AGRLAKLGAV DVEYKRVPCE YKGKNLSLRV EQRSRAPSEL AVTILYQGGQ TDIVAVDVAQ VGASSSWRSL
201: TRDHGPAWST SLAPPGPLRL RAVVTGGYDG KWVWADREVL PRHWRAGEVY DTGVQITDIA QEACFPCDTQ ERR
001: MATSFFAGHI AAAIPSIYKD GAGCGACFQV RCKNPKLCNS KGTIVMVTDL NTSNQTDLVL SSRAFRAMAK PVVGVDKYLL KQGIVDVEYQ RVPCNYGKRN
101: LNVRVEEASK KPNYLAIKLL YQGGQTEVVG IDIAPVGSSQ WSYMSRSHGA VWATDKVPTG ALQFKFTVTG GYDGKTVWSK RVLPANWNSG RIYDAGVQIT
201: DIAQEGCDTC GHIWN
101: LNVRVEEASK KPNYLAIKLL YQGGQTEVVG IDIAPVGSSQ WSYMSRSHGA VWATDKVPTG ALQFKFTVTG GYDGKTVWSK RVLPANWNSG RIYDAGVQIT
201: DIAQEGCDTC GHIWN
Arabidopsis Description
EXLA3Expansin-like A3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZT5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.