Factsheet for Solyc01g112000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047948	Potato	extracellular	94.25	94.62
KRH29091	Soybean	extracellular	71.26	71.81
KRH24119	Soybean	extracellular	70.5	70.5
VIT_03s0038g03430.t01	Wine grape	extracellular	67.82	68.34
AT3G45970.1	Thale cress	extracellular	63.22	62.26
Bra033563.1-P	Field mustard	extracellular	62.45	61.74
CDY69288	Canola	extracellular	62.45	61.74
CDY61895	Canola	extracellular	63.22	61.34
Bra011899.1-P	Field mustard	extracellular	63.22	61.34
CDY52801	Canola	extracellular	62.84	60.97
AT3G45960.2	Thale cress	extracellular	60.54	60.08
CDY64278	Canola	extracellular	60.92	60.0
AT4G38400.1	Thale cress	extracellular	60.92	60.0
GSMUA_Achr11P...	Banana	extracellular	60.92	59.77
CDY72634	Canola	extracellular	60.54	59.62
GSMUA_Achr5P19030_001	Banana	extracellular	59.0	58.33
TraesCS4B01G326900.1	Wheat	extracellular	59.77	56.73
GSMUA_Achr5P11590_001	Banana	extracellular	56.7	56.7
GSMUA_Achr11P...	Banana	extracellular	57.47	56.6
TraesCS5A01G498900.1	Wheat	extracellular	59.39	56.36
TraesCS4D01G324000.1	Wheat	extracellular	58.62	56.04
TraesCS4B01G327200.1	Wheat	extracellular	57.47	55.97
TraesCS4D01G323600.1	Wheat	extracellular	59.0	55.6
EER95568	Sorghum	extracellular	57.09	55.19
TraesCS5A01G499300.1	Wheat	nucleus	57.47	54.95
HORVU4Hr1G081990.2	Barley	extracellular	58.62	54.64
TraesCS4D01G323900.1	Wheat	golgi	56.32	54.24
Os03t0132200-01	Rice	extracellular, plastid	57.85	54.12
TraesCS5A01G499100.1	Wheat	extracellular	51.34	53.6
Os10t0542400-01	Rice	extracellular	55.94	53.09
TraesCS4B01G327100.1	Wheat	golgi	54.79	52.77
Zm00001d027520_P001	Maize	extracellular	55.94	52.52
TraesCS1B01G217200.1	Wheat	extracellular	55.17	52.36
Zm00001d048344_P002	Maize	extracellular	54.79	52.19
Zm00001d029783_P003	Maize	extracellular	54.79	52.0
TraesCS5A01G499200.1	Wheat	extracellular	51.72	51.33
HORVU1Hr1G052290.4	Barley	extracellular	54.41	51.26
KXG38992	Sorghum	extracellular	55.17	51.06
GSMUA_AchrUn_...	Banana	extracellular	36.78	51.06
TraesCS1A01G203200.1	Wheat	extracellular	55.17	51.06
HORVU4Hr1G081800.6	Barley	extracellular, golgi, plastid	57.85	50.5
TraesCS1D01G206700.1	Wheat	extracellular	54.41	50.18
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	57.09	48.53
TraesCS4D01G323800.2	Wheat	extracellular	55.56	48.01
EER99370	Sorghum	extracellular	49.81	47.45
Os07t0475400-01	Rice	extracellular	48.66	46.01
Zm00001d006360_P001	Maize	extracellular	47.13	45.22
Solyc06g060970.1.1	Tomato	extracellular	37.55	39.52
Solyc08g077330.2.1	Tomato	extracellular	36.78	37.65
Solyc08g077900.2.1	Tomato	extracellular	35.25	36.36
Solyc08g077910.2.1	Tomato	extracellular	34.87	36.26
HORVU7Hr1G119340.3	Barley	extracellular, golgi, plastid	42.53	35.92
TraesCS7D01G532200.1	Wheat	extracellular	41.76	35.28
TraesCS7A01G545900.1	Wheat	extracellular	41.38	34.95
TraesCSU01G099200.1	Wheat	endoplasmic reticulum, extracellular	41.0	34.74
TraesCS7A01G545800.1	Wheat	extracellular	39.85	34.55
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	41.38	34.18
HORVU7Hr1G119200.1	Barley	golgi, plastid, vacuole	41.38	34.18
Os06t0725300-01	Rice	endoplasmic reticulum	40.23	33.55
TraesCS7D01G532400.1	Wheat	extracellular	39.46	33.44
TraesCS7D01G532500.1	Wheat	extracellular	41.0	33.33
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	40.61	33.23
TraesCS7A01G546300.1	Wheat	endoplasmic reticulum, extracellular	40.61	33.02
HORVU7Hr1G119220.1	Barley	extracellular, golgi, plastid	39.46	32.91
TraesCS7A01G546000.1	Wheat	endoplasmic reticulum, extracellular	40.61	32.82
TraesCSU01G099100.1	Wheat	extracellular, golgi	39.08	32.69
Zm00001d014826_P001	Maize	endoplasmic reticulum, extracellular, vacuole	38.31	31.35
Solyc01g090810.2.1	Tomato	extracellular	27.59	26.18
Solyc10g018500.1.1	Tomato	extracellular	26.44	26.04
Solyc05g052330.1.1	Tomato	extracellular	26.05	25.37
Solyc07g054170.2.1	Tomato	extracellular	25.67	25.09
Solyc01g090820.1.1	Tomato	extracellular	23.75	24.12
Solyc07g049540.1.1	Tomato	extracellular	23.75	24.12
Solyc10g008440.2.1	Tomato	extracellular	23.75	23.66
KXG20919	Sorghum	plastid	39.85	23.48
Solyc03g093390.2.1	Tomato	extracellular, nucleus	24.9	22.81
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	42.53	17.24

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.2	UniProt:A7X331	EMBL:DQ178133	InterPro:Expan_Lol_pI
InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576
GO:GO:0008150	GO:GO:0019953	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
InterPro:LolPI	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842
PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF4	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837
SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g112000.2	EnsemblPlants:Solyc01g112000.2.1	UniParc:UPI00015C057E
SEG:seg	:	:	:	:	:

Description

Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:A7X331]

Coordinates

chr1:+:98135694..98137583

Molecular Weight (calculated)

28312.7 Da

IEP (calculated)

7.887

GRAVY (calculated)

-0.003

Length

261 amino acids

Sequence
(BLAST)

001: MSLFFLVLLL FVSSVTACDR CVHRSKVAYF SSSSALLSGA CGYGNLAIGF NGGRLAAAVP KLYDNGAGCG ACYQIRCTDP KICSKHGTTV MVTDLNTNNQ
101: TDFVISSRAF MAMAIEGKAQ DVHKLGIADV EYKRVPCDYK GKNLAVRVDE SSQKPHYLAI SIFYQGGQTE IVSVDVAQVG SSNWNFLSRN HGAIWDTSRV
201: PSGALQFRFV VTAGYDGKWI WAKSVLPSDW KNGVVYDTGL QITDIAQEGC SPCDDGSWKL N

Best Arabidopsis Sequence Match ( AT3G45970.1 )
(BLAST)

001: MGSFLFLIVV IFLFSSSVNA CDRCLHRSKA AYFSSASALS SGACAYGSMA TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCSTKG TIVMITDLNK
101: SNQTDLVLSS RAFRAMAKPI VGADKDLLKQ GIVDIEYQRV PCDYGNKNMN VRVEEASKKP NYLEIKLLYQ GGQTEVVSID IAQVGSSPNW GYMTRSHGAV
201: WVTDKVPTGA IQFRFVVTGG YDGKMIWSQS VLPSNWEAGK IYDAGVQITD IAQEGCDPCD AHIWN

Arabidopsis Description

EXLA1Expansin-like A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZT4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.