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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d029783_P003 Maize extracellular 89.72 92.0
Os10t0542400-01 Rice extracellular 76.95 78.91
TraesCS1B01G217200.1 Wheat extracellular 71.99 73.82
EER95568 Sorghum extracellular 70.21 73.33
TraesCS1A01G203200.1 Wheat extracellular 72.34 72.34
HORVU1Hr1G052290.4 Barley extracellular 70.57 71.84
TraesCS1D01G206700.1 Wheat extracellular 71.63 71.38
GSMUA_Achr11P... Banana extracellular 58.87 62.41
GSMUA_Achr5P19030_001 Banana extracellular 58.16 62.12
GSMUA_Achr5P11590_001 Banana extracellular 54.26 58.62
GSMUA_AchrUn_... Banana extracellular 38.65 57.98
GSMUA_Achr11P... Banana extracellular 53.55 56.98
EER99370 Sorghum extracellular 54.96 56.57
Solyc01g112000.2.1 Tomato extracellular 51.06 55.17
PGSC0003DMT400047948 Potato extracellular 50.71 55.0
VIT_03s0038g03430.t01 Wine grape extracellular 50.35 54.83
KRH29091 Soybean extracellular 49.65 54.05
KRH24119 Soybean extracellular 50.0 54.02
AT3G45970.1 Thale cress extracellular 48.58 51.7
Bra033563.1-P Field mustard extracellular 48.23 51.52
CDY69288 Canola extracellular 48.23 51.52
AT3G45960.2 Thale cress extracellular 47.52 50.95
GSMUA_Achr1P02170_001 Banana extracellular, peroxisome, plastid 55.32 50.81
Bra011899.1-P Field mustard extracellular 48.23 50.56
CDY61895 Canola extracellular 48.23 50.56
AT4G38400.1 Thale cress extracellular 47.16 50.19
CDY64278 Canola extracellular 47.16 50.19
CDY52801 Canola extracellular 47.87 50.19
CDY72634 Canola extracellular 46.81 49.81
EES11234 Sorghum extracellular 26.24 28.14
KXG20919 Sorghum plastid 43.26 27.54
EER88254 Sorghum extracellular 24.82 27.03
OQU89980 Sorghum extracellular, plasma membrane, vacuole 21.28 26.67
KXG19818 Sorghum extracellular 24.47 26.64
EES05780 Sorghum extracellular 27.66 26.44
EES07508 Sorghum extracellular 27.3 26.19
EES05488 Sorghum extracellular 23.76 24.54
OQU93456 Sorghum cytosol, extracellular 18.44 24.53
EES11235 Sorghum extracellular 25.18 24.4
EES11233 Sorghum extracellular 24.47 23.96
EES07509 Sorghum extracellular 22.34 23.86
EER98447 Sorghum extracellular 25.53 23.45
EER91942 Sorghum extracellular 21.99 23.31
EER98449 Sorghum extracellular 25.53 23.08
EER91947 Sorghum extracellular 21.99 23.05
OQU93459 Sorghum extracellular 21.63 22.93
EER91945 Sorghum extracellular 22.34 22.83
EER95683 Sorghum extracellular 21.28 22.56
EER95684 Sorghum extracellular 21.28 22.56
OQU93458 Sorghum extracellular 21.28 22.56
OQU93457 Sorghum extracellular 21.28 22.56
EER91948 Sorghum extracellular 21.99 22.3
OQU93455 Sorghum extracellular 20.21 22.27
EER94537 Sorghum extracellular 20.92 22.18
KXG38969 Sorghum extracellular 20.92 22.18
KXG38972 Sorghum extracellular 20.92 22.18
EER93754 Sorghum extracellular 23.76 21.9
KXG40416 Sorghum extracellular, vacuole 24.47 21.56
OQU92157 Sorghum extracellular 23.05 21.1
EER94500 Sorghum extracellular 21.63 21.03
EER94506 Sorghum extracellular 20.92 20.92
EER91949 Sorghum extracellular 20.92 20.92
KXG40417 Sorghum mitochondrion 21.99 20.88
KXG37946 Sorghum extracellular 23.4 20.31
EES05315 Sorghum extracellular 22.7 20.13
KXG38933 Sorghum mitochondrion 22.7 20.06
OQU92156 Sorghum plastid 22.34 19.38
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:21.4.2.2UniProt:A0A1B6QM41InterPro:Expan_Lol_pIInterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBDInterPro:Expansin_CBD_sfGO:GO:0005575GO:GO:0005576InterPro:IPR007112InterPro:IPR007117
InterPro:IPR036749InterPro:IPR036908EnsemblPlants:KXG38992ProteinID:KXG38992ProteinID:KXG38992.1PFAM:PF01357
PFAM:PF03330PRINTS:PR01225PFscan:PS50842PFscan:PS50843PANTHER:PTHR31692PANTHER:PTHR31692:SF53
InterPro:RlpA-like_DPBBInterPro:RlpA-like_sfSMART:SM00837EnsemblPlantsGene:SORBI_3001G311000SUPFAM:SSF49590SUPFAM:SSF50685
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001C80A3FSEG:seg::
Description
hypothetical protein
Coordinates
chr1:-:59789307..59792062
Molecular Weight (calculated)
30160.9 Da
IEP (calculated)
8.827
GRAVY (calculated)
-0.034
Length
282 amino acids
Sequence
(BLAST)
001: MAVVTRGAAS LPFVLLLPVL VVVVVFAAPS PANGCDRCVR RSKATYQASS LALNAGSCGY GSLAASFNGG FLAAASPELY RGGVACGACF QVRCRDSELC
101: SAAGAKVVVT DQARTSSNRT GLVLSAAAYA AMATARAGKA ARLRDRRVVD VEYKRIPCEY AKDRNLSIRV EEKSRPPSDL SIRFLYQGGQ TDIVAVDVAT
201: VGSSNWRFMT RDHGPAWSTA QAPAGPLQLR LVVTGGYDGK WVWAESEVLP RRWEAGRVYD TGVQVSDVAQ EGCYPCDTHQ WQ
Best Arabidopsis Sequence Match ( AT3G45970.1 )
(BLAST)
001: MGSFLFLIVV IFLFSSSVNA CDRCLHRSKA AYFSSASALS SGACAYGSMA TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCSTKG TIVMITDLNK
101: SNQTDLVLSS RAFRAMAKPI VGADKDLLKQ GIVDIEYQRV PCDYGNKNMN VRVEEASKKP NYLEIKLLYQ GGQTEVVSID IAQVGSSPNW GYMTRSHGAV
201: WVTDKVPTGA IQFRFVVTGG YDGKMIWSQS VLPSNWEAGK IYDAGVQITD IAQEGCDPCD AHIWN
Arabidopsis Description
EXLA1Expansin-like A1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZT4]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.