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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 9
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 6
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d026170_P001 Maize extracellular 92.78 93.13
TraesCS2D01G411000.1 Wheat extracellular 80.99 81.3
TraesCS2A01G413600.1 Wheat extracellular 80.61 80.92
Os04t0552000-00 Rice extracellular 80.61 80.3
Os05t0246300-01 Rice extracellular 80.23 79.92
TraesCS2B01G432300.1 Wheat plastid 77.95 78.24
HORVU2Hr1G097480.1 Barley extracellular 81.37 75.62
EES07509 Sorghum extracellular 69.58 69.32
KXG19818 Sorghum extracellular 65.4 66.41
EER88254 Sorghum extracellular 65.02 66.02
GSMUA_AchrUn_... Banana extracellular 60.84 60.61
VIT_15s0021g02670.t01 Wine grape extracellular 60.84 58.61
Solyc01g090810.2.1 Tomato extracellular 60.84 58.18
PGSC0003DMT400048506 Potato plastid 42.59 57.73
VIT_15s0021g02700.t01 Wine grape extracellular 59.7 57.51
GSMUA_Achr4P26910_001 Banana extracellular 59.32 57.35
EER93754 Sorghum extracellular 66.54 57.19
KRH33426 Soybean extracellular 57.41 55.51
CDY18948 Canola extracellular 41.06 55.38
EES11235 Sorghum extracellular 61.22 55.33
KRH75302 Soybean extracellular 58.17 55.23
KRG88934 Soybean extracellular, vacuole 57.79 54.87
EES07508 Sorghum extracellular 61.22 54.76
CDY18951 Canola extracellular 57.03 54.55
KRH33423 Soybean extracellular 57.41 54.51
EES05780 Sorghum extracellular 60.84 54.24
EES11233 Sorghum extracellular 58.94 53.82
KXG37946 Sorghum extracellular 66.16 53.54
AT1G65680.1 Thale cress extracellular 55.51 53.48
CDY70406 Canola extracellular 54.75 52.55
CDX74710 Canola extracellular 54.75 52.55
Bra004889.1-P Field mustard extracellular 54.75 52.36
CDY18950 Canola cytosol, extracellular, plastid 46.01 51.05
AT2G45110.1 Thale cress extracellular 49.81 50.58
VIT_09s0002g08510.t01 Wine grape extracellular 53.61 50.54
CDY72345 Canola cytosol 46.77 50.41
CDY72655 Canola cytosol, plastid 32.32 50.3
AT1G65681.1 Thale cress cytosol 42.59 50.22
CDX83404 Canola extracellular 49.05 49.81
Bra000370.1-P Field mustard extracellular 49.05 49.81
Solyc10g018500.1.1 Tomato extracellular 49.81 49.43
CDY72505 Canola cytosol 30.04 49.38
Solyc03g093390.2.1 Tomato extracellular, nucleus 53.23 49.12
KRH65410 Soybean extracellular 49.81 49.06
CDX74711 Canola extracellular 48.67 49.04
CDY14888 Canola extracellular 49.05 48.68
CDX96901 Canola extracellular 49.05 48.68
Bra035987.1-P Field mustard extracellular 49.05 48.68
EER98447 Sorghum extracellular 55.51 47.56
CDY18946 Canola extracellular 47.91 47.37
EER91942 Sorghum extracellular 47.15 46.62
EER98449 Sorghum extracellular 55.13 46.47
Solyc01g090820.1.1 Tomato extracellular 44.49 45.53
PGSC0003DMT400030395 Potato cytosol, extracellular, mitochondrion, nucleus 22.43 45.38
Bra004890.1-P Field mustard extracellular 54.37 44.97
EER94506 Sorghum extracellular 47.91 44.68
EER91949 Sorghum extracellular 47.91 44.68
Solyc07g049540.1.1 Tomato extracellular 42.97 43.97
EER91947 Sorghum extracellular 44.87 43.87
CDX95627 Canola extracellular 46.39 43.73
KXG38969 Sorghum extracellular 44.11 43.61
KXG38972 Sorghum extracellular 44.11 43.61
OQU93456 Sorghum cytosol, extracellular 34.98 43.4
EER94537 Sorghum extracellular 43.73 43.23
Solyc05g052330.1.1 Tomato extracellular 43.73 42.91
CDX74713 Canola extracellular 54.37 41.69
AT3G60570.1 Thale cress extracellular 41.44 41.29
OQU92157 Sorghum extracellular 48.29 41.23
OQU93455 Sorghum extracellular 39.92 41.02
CDX67835 Canola extracellular 41.44 40.98
Bra003421.1-P Field mustard extracellular 41.44 40.98
CDY71186 Canola extracellular 42.21 40.96
EER91945 Sorghum extracellular 42.97 40.94
KXG40417 Sorghum mitochondrion 46.01 40.74
PGSC0003DMT400095086 Potato plastid 38.4 40.4
EER91948 Sorghum extracellular 42.59 40.29
EER95684 Sorghum extracellular 40.68 40.23
OQU93459 Sorghum extracellular 40.3 39.85
EER94500 Sorghum extracellular 43.73 39.66
KXG38933 Sorghum mitochondrion 47.91 39.5
Bra004891.1-P Field mustard cytosol, nucleus, plastid 20.53 39.13
OQU93457 Sorghum extracellular 39.54 39.1
OQU93458 Sorghum extracellular 39.54 39.1
EER95683 Sorghum extracellular 39.54 39.1
OQU92156 Sorghum plastid 48.29 39.08
KXG40416 Sorghum extracellular, vacuole 46.77 38.44
EES05488 Sorghum extracellular 39.54 38.1
EES05315 Sorghum extracellular 44.49 36.79
CDY48362 Canola extracellular 44.87 33.05
Bra014484.1-P Field mustard extracellular 44.87 32.78
PGSC0003DMT400066943 Potato cytosol, plastid, vacuole 54.37 31.15
EER95568 Sorghum extracellular 29.66 28.89
EER99370 Sorghum extracellular 30.04 28.83
KXG38992 Sorghum extracellular 28.14 26.24
OQU89980 Sorghum extracellular, plasma membrane, vacuole 20.91 24.44
KXG20919 Sorghum plastid 23.95 14.22
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:35.1EntrezGene:8083371UniProt:C5YDI0EnsemblPlants:EES11234
ProteinID:EES11234ProteinID:EES11234.1InterPro:Expan_Lol_pIInterPro:Expansin/allergen_DPBB_domInterPro:Expansin_CBDInterPro:Expansin_CBD_sf
GO:GO:0000003GO:GO:0005575GO:GO:0005576GO:GO:0008150GO:GO:0019953InterPro:IPR007112
InterPro:IPR007117InterPro:IPR036749InterPro:IPR036908InterPro:LolPIPFAM:PF01357PFAM:PF03330
PRINTS:PR00829PRINTS:PR01225PFscan:PS50842PFscan:PS50843PANTHER:PTHR31692PANTHER:PTHR31692:SF52
InterPro:RlpA-like_DPBBInterPro:RlpA-like_sfSMART:SM00837EnsemblPlantsGene:SORBI_3006G171200SUPFAM:SSF49590SUPFAM:SSF50685
unigene:Sbi.16939SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A86FD3RefSeq:XP_002446906.1SEG:seg
Description
hypothetical protein
Coordinates
chr6:+:52765817..52767437
Molecular Weight (calculated)
26910.8 Da
IEP (calculated)
7.634
GRAVY (calculated)
0.130
Length
263 amino acids
Sequence
(BLAST)
001: MASKSQLLSF IAIAALASII IHPCASVEFH RKLSSWSSGG ATWYGAATGA GSDGGACGYR GAVDQAPFSS MIAAGSPSIY NSGKGCGSCF QVKCTGNGAC
101: SGNPVTVVIT DECPGGACLN EPGHFDMSGT AFGAMANPGQ ADKLRNAGVL QIQYTRVPCN WPGVKLTFVV DAGSNPEYFA VLIKYVNGDG DLSAVDLMQT
201: GAGALWASMQ PSWGAVWKFN AGSALQAPLS IRLTSSSGKQ LVASNVIPAG WTPGATYQSS VNY
Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)
001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
Arabidopsis Description
EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.