Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 10
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029899_P001 | Maize | extracellular, mitochondrion | 93.1 | 95.74 |
| Zm00001d047087_P001 | Maize | extracellular | 89.66 | 90.91 |
| Os10t0556100-01 | Rice | extracellular | 87.59 | 88.81 |
| TraesCS1A01G212600.1 | Wheat | extracellular | 76.9 | 80.22 |
| TraesCS1B01G226100.1 | Wheat | extracellular | 76.55 | 71.15 |
| TraesCS1D01G215500.1 | Wheat | extracellular | 76.9 | 70.79 |
| KXG40417 | Sorghum | mitochondrion | 70.34 | 68.69 |
| EER91942 | Sorghum | extracellular | 61.72 | 67.29 |
| EER91947 | Sorghum | extracellular | 60.34 | 65.06 |
| OQU92157 | Sorghum | extracellular | 64.14 | 60.39 |
| EER91945 | Sorghum | extracellular | 57.24 | 60.14 |
| EER94506 | Sorghum | extracellular | 57.24 | 58.87 |
| EER91949 | Sorghum | extracellular | 57.24 | 58.87 |
| KXG38933 | Sorghum | mitochondrion | 63.1 | 57.37 |
| OQU92156 | Sorghum | plastid | 64.14 | 57.23 |
| EER94537 | Sorghum | extracellular | 51.03 | 55.64 |
| KXG38972 | Sorghum | extracellular | 51.03 | 55.64 |
| KXG38969 | Sorghum | extracellular | 50.69 | 55.26 |
| EES05315 | Sorghum | extracellular | 59.66 | 54.4 |
| KXG40416 | Sorghum | extracellular, vacuole | 60.0 | 54.38 |
| OQU93456 | Sorghum | cytosol, extracellular | 37.24 | 50.94 |
| OQU93455 | Sorghum | extracellular | 44.14 | 50.0 |
| OQU93458 | Sorghum | extracellular | 45.17 | 49.25 |
| EER95683 | Sorghum | extracellular | 45.17 | 49.25 |
| OQU93457 | Sorghum | extracellular | 45.17 | 49.25 |
| OQU93459 | Sorghum | extracellular | 44.48 | 48.5 |
| EER91948 | Sorghum | extracellular | 46.21 | 48.2 |
| EER95684 | Sorghum | extracellular | 44.14 | 48.12 |
| GSMUA_AchrUn_... | Banana | extracellular | 15.17 | 47.83 |
| KXG19818 | Sorghum | extracellular | 39.66 | 44.4 |
| EES07509 | Sorghum | extracellular | 40.34 | 44.32 |
| EES11234 | Sorghum | extracellular | 39.66 | 43.73 |
| EES11235 | Sorghum | extracellular | 43.79 | 43.64 |
| EER88254 | Sorghum | extracellular | 38.97 | 43.63 |
| EES07508 | Sorghum | extracellular | 43.79 | 43.2 |
| EES05780 | Sorghum | extracellular | 43.1 | 42.37 |
| EES11233 | Sorghum | extracellular | 40.0 | 40.28 |
| EER98447 | Sorghum | extracellular | 40.69 | 38.44 |
| EER98449 | Sorghum | extracellular | 41.03 | 38.14 |
| EES05488 | Sorghum | extracellular | 35.17 | 37.36 |
| KXG37946 | Sorghum | extracellular | 40.34 | 36.0 |
| EER93754 | Sorghum | extracellular | 37.24 | 35.29 |
| EER95568 | Sorghum | extracellular | 23.79 | 25.56 |
| EER99370 | Sorghum | extracellular | 23.79 | 25.18 |
| KXG38992 | Sorghum | extracellular | 21.03 | 21.63 |
| OQU89980 | Sorghum | extracellular, plasma membrane, vacuole | 15.52 | 20.0 |
| KXG20919 | Sorghum | plastid | 21.38 | 14.0 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:35.1 | EntrezGene:8058088 | UniProt:C5WSE5 | ncoils:Coil |
| EnsemblPlants:EER94500 | ProteinID:EER94500 | ProteinID:EER94500.1 | InterPro:Expan_Lol_pI | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD |
| InterPro:Expansin_CBD_sf | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0008150 | GO:GO:0019953 |
| InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | InterPro:LolPI | PFAM:PF01357 |
| PFAM:PF03330 | PRINTS:PR00829 | PRINTS:PR01225 | PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31692 |
| PANTHER:PTHR31692:SF9 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SMART:SM00837 | EnsemblPlantsGene:SORBI_3001G300400 | SUPFAM:SSF49590 |
| SUPFAM:SSF50685 | unigene:Sbi.4113 | SignalP:SignalP-noTM | UniParc:UPI0001A82F42 | RefSeq:XP_002467502.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:-:58170939..58174678
Molecular Weight (calculated)
31854.5 Da
IEP (calculated)
7.402
GRAVY (calculated)
-0.406
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFPSSSLPA AAAAAALVLL ALLAGGGECR EAQFDATDAA GAGAENFNTS DAAVYWGPWQ KARATWYGQP NGAGPDDNGG ACGFKHTNQY PFMSMGSCGN
101: QPLFKDGKGC GSCYKIRCTK DRSCSGRAET VIITDMNYYP VSKYHFDLSG TAFGRLAKPG LNDKLRHSGI IDIEFTRVPC EFPGLKIGFH VEEYSNPVYF
201: AVLVEYEDGD GDVVQVDLME SKTAHGPPTG RWTPMRESWG SIWRMDTNHR MQPPFSIRIR NESGKTLVAR NVIPANWRPN TFYRSFVQYQ
101: QPLFKDGKGC GSCYKIRCTK DRSCSGRAET VIITDMNYYP VSKYHFDLSG TAFGRLAKPG LNDKLRHSGI IDIEFTRVPC EFPGLKIGFH VEEYSNPVYF
201: AVLVEYEDGD GDVVQVDLME SKTAHGPPTG RWTPMRESWG SIWRMDTNHR MQPPFSIRIR NESGKTLVAR NVIPANWRPN TFYRSFVQYQ
001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
Arabidopsis Description
EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.